Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.85■□□□□ 0.93
SCN4AP35499 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.85■□□□□ 0.93
SCN4AP35499 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SCN4AP35499 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 AC087163.2-201ENST00000457299 853 ntBASIC20.85■□□□□ 0.93
SCN4AP35499 AC022494.1-201ENST00000466044 728 ntBASIC20.85■□□□□ 0.93
SCN4AP35499 AC079140.1-201ENST00000508039 487 ntBASIC20.85■□□□□ 0.93
SCN4AP35499 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC20.85■□□□□ 0.93
SCN4AP35499 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SCN4AP35499 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.85■□□□□ 0.93
SCN4AP35499 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.85■□□□□ 0.93
SCN4AP35499 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SCN4AP35499 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
SCN4AP35499 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.84■□□□□ 0.93
SCN4AP35499 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SCN4AP35499 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.84■□□□□ 0.93
SCN4AP35499 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.84■□□□□ 0.93
SCN4AP35499 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 AKAP8P1-201ENST00000434743 1349 ntBASIC20.84■□□□□ 0.93
SCN4AP35499 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 RAC2-204ENST00000406508 893 ntTSL 5 BASIC20.84■□□□□ 0.93
SCN4AP35499 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC20.84■□□□□ 0.93
SCN4AP35499 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SCN4AP35499 SRP9-204ENST00000619790 377 ntTSL 2 BASIC20.84■□□□□ 0.93
SCN4AP35499 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC20.84■□□□□ 0.93
SCN4AP35499 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SCN4AP35499 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
SCN4AP35499 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC20.83■□□□□ 0.93
SCN4AP35499 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC20.83■□□□□ 0.93
SCN4AP35499 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.83■□□□□ 0.93
SCN4AP35499 AC092580.3-201ENST00000430932 139 ntBASIC20.83■□□□□ 0.93
SCN4AP35499 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.83■□□□□ 0.93
SCN4AP35499 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.83■□□□□ 0.93
SCN4AP35499 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SCN4AP35499 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC20.83■□□□□ 0.93
SCN4AP35499 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SCN4AP35499 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.92
SCN4AP35499 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC20.83■□□□□ 0.92
SCN4AP35499 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 MRPS18AP1-201ENST00000414458 589 ntBASIC20.83■□□□□ 0.92
SCN4AP35499 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.83■□□□□ 0.92
SCN4AP35499 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
SCN4AP35499 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.83■□□□□ 0.92
SCN4AP35499 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SCN4AP35499 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.83■□□□□ 0.92
SCN4AP35499 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SCN4AP35499 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN4AP35499 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN4AP35499 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SCN4AP35499 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN4AP35499 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN4AP35499 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SCN4AP35499 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN4AP35499 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SCN4AP35499 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.82■□□□□ 0.92
SCN4AP35499 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.82■□□□□ 0.92
SCN4AP35499 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.82■□□□□ 0.92
SCN4AP35499 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.82■□□□□ 0.92
SCN4AP35499 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC20.82■□□□□ 0.92
SCN4AP35499 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.82■□□□□ 0.92
SCN4AP35499 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.82■□□□□ 0.92
SCN4AP35499 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.82■□□□□ 0.92
SCN4AP35499 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN4AP35499 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
SCN4AP35499 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
SCN4AP35499 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC20.81■□□□□ 0.92
SCN4AP35499 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN4AP35499 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SCN4AP35499 AC243562.1-201ENST00000560672 389 ntBASIC20.81■□□□□ 0.92
SCN4AP35499 RARRES2P8-201ENST00000566335 367 ntBASIC20.81■□□□□ 0.92
SCN4AP35499 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms