Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS2P33552 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS2P33552 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.13□□□□□ -0.31
CKS2P33552 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS2P33552 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS2P33552 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS2P33552 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CKS2P33552 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.13□□□□□ -0.31
CKS2P33552 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC13.13□□□□□ -0.31
CKS2P33552 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CKS2P33552 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CKS2P33552 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.12□□□□□ -0.31
CKS2P33552 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CKS2P33552 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.12□□□□□ -0.31
CKS2P33552 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CKS2P33552 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.12□□□□□ -0.31
CKS2P33552 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 ME3-201ENST00000323418 1068 ntTSL 5 BASIC13.12□□□□□ -0.31
CKS2P33552 GUK1-205ENST00000366722 850 ntTSL 3 BASIC13.12□□□□□ -0.31
CKS2P33552 MIR564-202ENST00000385049 94 ntBASIC13.12□□□□□ -0.31
CKS2P33552 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC13.12□□□□□ -0.31
CKS2P33552 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.12□□□□□ -0.31
CKS2P33552 BET1L-207ENST00000529614 560 ntTSL 5 BASIC13.12□□□□□ -0.31
CKS2P33552 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC13.12□□□□□ -0.31
CKS2P33552 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CKS2P33552 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC13.12□□□□□ -0.31
CKS2P33552 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC13.12□□□□□ -0.31
CKS2P33552 AC034236.2-201ENST00000606662 1610 ntBASIC13.12□□□□□ -0.31
CKS2P33552 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 DOC2GP-204ENST00000639052 2548 ntBASIC13.12□□□□□ -0.31
CKS2P33552 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CKS2P33552 AL162727.3-201ENST00000635661 2787 ntBASIC13.12□□□□□ -0.31
CKS2P33552 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.12□□□□□ -0.31
CKS2P33552 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CKS2P33552 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.12□□□□□ -0.31
CKS2P33552 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CKS2P33552 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 AC009102.3-201ENST00000623118 1491 ntBASIC13.11□□□□□ -0.31
CKS2P33552 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13.11□□□□□ -0.31
CKS2P33552 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC13.11□□□□□ -0.31
CKS2P33552 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 KRT8P50-201ENST00000562022 1438 ntBASIC13.11□□□□□ -0.31
CKS2P33552 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.11□□□□□ -0.31
CKS2P33552 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CKS2P33552 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CKS2P33552 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CKS2P33552 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
CKS2P33552 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms