Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CIITAP33076 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.01■□□□□ 0.79
CIITAP33076 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.01■□□□□ 0.79
CIITAP33076 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.01■□□□□ 0.79
CIITAP33076 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.01■□□□□ 0.79
CIITAP33076 AL121894.2-201ENST00000602977 491 ntBASIC20.01■□□□□ 0.79
CIITAP33076 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CIITAP33076 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 PC-208ENST00000529047 1607 ntTSL 3 BASIC20.01■□□□□ 0.79
CIITAP33076 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.01■□□□□ 0.79
CIITAP33076 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
CIITAP33076 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.01■□□□□ 0.79
CIITAP33076 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CIITAP33076 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.01■□□□□ 0.79
CIITAP33076 SIRPAP1-201ENST00000448467 1770 ntBASIC20■□□□□ 0.79
CIITAP33076 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20■□□□□ 0.79
CIITAP33076 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC20■□□□□ 0.79
CIITAP33076 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20■□□□□ 0.79
CIITAP33076 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20■□□□□ 0.79
CIITAP33076 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 AC002558.1-201ENST00000488906 803 ntBASIC20■□□□□ 0.79
CIITAP33076 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20■□□□□ 0.79
CIITAP33076 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20■□□□□ 0.79
CIITAP33076 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20■□□□□ 0.79
CIITAP33076 AL121912.1-201ENST00000603683 238 ntBASIC20■□□□□ 0.79
CIITAP33076 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20■□□□□ 0.79
CIITAP33076 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20■□□□□ 0.79
CIITAP33076 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20■□□□□ 0.79
CIITAP33076 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC20■□□□□ 0.79
CIITAP33076 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20■□□□□ 0.79
CIITAP33076 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 KRT8P10-201ENST00000450021 1447 ntBASIC20■□□□□ 0.79
CIITAP33076 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC20■□□□□ 0.79
CIITAP33076 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.99■□□□□ 0.79
CIITAP33076 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
CIITAP33076 GATB-213ENST00000515812 1893 ntTSL 5 BASIC19.99■□□□□ 0.79
CIITAP33076 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.99■□□□□ 0.79
CIITAP33076 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 AC079781.3-201ENST00000449110 356 ntBASIC19.99■□□□□ 0.79
CIITAP33076 FGFR3P6-201ENST00000457012 610 ntBASIC19.99■□□□□ 0.79
CIITAP33076 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
CIITAP33076 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.99■□□□□ 0.79
CIITAP33076 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.99■□□□□ 0.79
CIITAP33076 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
CIITAP33076 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CIITAP33076 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.99■□□□□ 0.79
CIITAP33076 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.99■□□□□ 0.79
CIITAP33076 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CIITAP33076 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.98■□□□□ 0.79
CIITAP33076 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.98■□□□□ 0.79
CIITAP33076 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC19.98■□□□□ 0.79
CIITAP33076 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.98■□□□□ 0.79
CIITAP33076 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 AC008608.2-201ENST00000606089 416 ntBASIC19.98■□□□□ 0.79
CIITAP33076 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 AL031008.1-201ENST00000619963 541 ntBASIC19.98■□□□□ 0.79
CIITAP33076 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.98■□□□□ 0.79
CIITAP33076 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CIITAP33076 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.98■□□□□ 0.79
CIITAP33076 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CIITAP33076 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CIITAP33076 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.98■□□□□ 0.79
CIITAP33076 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
CIITAP33076 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.97■□□□□ 0.79
CIITAP33076 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CIITAP33076 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CIITAP33076 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CIITAP33076 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CIITAP33076 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms