Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL2A1P02458 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.63■□□□□ 0.89
COL2A1P02458 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC20.63■□□□□ 0.89
COL2A1P02458 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL2A1P02458 AC004790.2-201ENST00000623588 572 ntBASIC20.62■□□□□ 0.89
COL2A1P02458 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.62■□□□□ 0.89
COL2A1P02458 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC20.62■□□□□ 0.89
COL2A1P02458 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.62■□□□□ 0.89
COL2A1P02458 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20.62■□□□□ 0.89
COL2A1P02458 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
COL2A1P02458 PTCHD3P3-201ENST00000403073 906 ntBASIC20.62■□□□□ 0.89
COL2A1P02458 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.62■□□□□ 0.89
COL2A1P02458 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.62■□□□□ 0.89
COL2A1P02458 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.62■□□□□ 0.89
COL2A1P02458 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.62■□□□□ 0.89
COL2A1P02458 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
COL2A1P02458 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.62■□□□□ 0.89
COL2A1P02458 OR7E47P-204ENST00000575924 449 ntBASIC20.62■□□□□ 0.89
COL2A1P02458 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.62■□□□□ 0.89
COL2A1P02458 AC134684.3-201ENST00000641758 218 ntBASIC20.62■□□□□ 0.89
COL2A1P02458 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL2A1P02458 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL2A1P02458 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL2A1P02458 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL2A1P02458 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
COL2A1P02458 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
COL2A1P02458 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC20.61■□□□□ 0.89
COL2A1P02458 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.61■□□□□ 0.89
COL2A1P02458 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
COL2A1P02458 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL2A1P02458 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL2A1P02458 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC20.61■□□□□ 0.89
COL2A1P02458 PDPK2P-202ENST00000562415 1191 ntBASIC20.61■□□□□ 0.89
COL2A1P02458 AC018845.2-201ENST00000568326 409 ntBASIC20.61■□□□□ 0.89
COL2A1P02458 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC20.61■□□□□ 0.89
COL2A1P02458 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL2A1P02458 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL2A1P02458 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC20.61■□□□□ 0.89
COL2A1P02458 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
COL2A1P02458 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
COL2A1P02458 AL590787.1-201ENST00000568856 1315 ntBASIC20.6■□□□□ 0.89
COL2A1P02458 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
COL2A1P02458 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.6■□□□□ 0.89
COL2A1P02458 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
COL2A1P02458 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.6■□□□□ 0.89
COL2A1P02458 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC20.6■□□□□ 0.89
COL2A1P02458 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.6■□□□□ 0.89
COL2A1P02458 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC20.6■□□□□ 0.89
COL2A1P02458 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC20.6■□□□□ 0.89
COL2A1P02458 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 AC092865.6-201ENST00000642101 219 ntBASIC20.6■□□□□ 0.89
COL2A1P02458 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL2A1P02458 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20.6■□□□□ 0.89
COL2A1P02458 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.6■□□□□ 0.89
COL2A1P02458 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL2A1P02458 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL2A1P02458 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 REXO1L11P-201ENST00000620964 1927 ntBASIC20.59■□□□□ 0.89
COL2A1P02458 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 AMT-250ENST00000637682 1823 ntTSL 5 BASIC20.59■□□□□ 0.89
COL2A1P02458 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.59■□□□□ 0.89
COL2A1P02458 MKNK2P1-201ENST00000437526 628 ntBASIC20.59■□□□□ 0.89
COL2A1P02458 RHOQP3-201ENST00000437982 621 ntBASIC20.59■□□□□ 0.89
COL2A1P02458 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.59■□□□□ 0.89
COL2A1P02458 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC20.59■□□□□ 0.89
COL2A1P02458 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
COL2A1P02458 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 AL513190.1-201ENST00000621254 727 ntBASIC20.59■□□□□ 0.89
COL2A1P02458 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL2A1P02458 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
COL2A1P02458 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL2A1P02458 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms