Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLDN9O95484 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.23■□□□□ 0.35
CLDN9O95484 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CLDN9O95484 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.23■□□□□ 0.35
CLDN9O95484 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.23■□□□□ 0.35
CLDN9O95484 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.23■□□□□ 0.35
CLDN9O95484 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.23■□□□□ 0.35
CLDN9O95484 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CLDN9O95484 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLDN9O95484 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.23■□□□□ 0.35
CLDN9O95484 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.23■□□□□ 0.35
CLDN9O95484 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 LINC01451-201ENST00000623792 534 ntBASIC17.23■□□□□ 0.35
CLDN9O95484 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.23■□□□□ 0.35
CLDN9O95484 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.23■□□□□ 0.35
CLDN9O95484 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CLDN9O95484 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 AL645608.8-201ENST00000606034 2086 ntBASIC17.23■□□□□ 0.35
CLDN9O95484 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.23■□□□□ 0.35
CLDN9O95484 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLDN9O95484 AL138688.1-201ENST00000624851 1594 ntBASIC17.23■□□□□ 0.35
CLDN9O95484 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.23■□□□□ 0.35
CLDN9O95484 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLDN9O95484 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CLDN9O95484 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 AC141586.5-201ENST00000624546 2050 ntBASIC17.22■□□□□ 0.35
CLDN9O95484 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.22■□□□□ 0.35
CLDN9O95484 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.22■□□□□ 0.35
CLDN9O95484 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.22■□□□□ 0.35
CLDN9O95484 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.22■□□□□ 0.35
CLDN9O95484 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.22■□□□□ 0.35
CLDN9O95484 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.22■□□□□ 0.35
CLDN9O95484 HYMAI.1-201ENST00000620949 238 ntBASIC17.22■□□□□ 0.35
CLDN9O95484 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.22■□□□□ 0.35
CLDN9O95484 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CLDN9O95484 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CLDN9O95484 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
CLDN9O95484 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLDN9O95484 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.21■□□□□ 0.35
CLDN9O95484 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.21■□□□□ 0.35
CLDN9O95484 LINC01311-201ENST00000565162 1445 ntBASIC17.21■□□□□ 0.35
CLDN9O95484 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLDN9O95484 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CLDN9O95484 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CLDN9O95484 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLDN9O95484 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLDN9O95484 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLDN9O95484 AC104076.2-201ENST00000448912 469 ntBASIC17.21■□□□□ 0.35
CLDN9O95484 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLDN9O95484 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.21■□□□□ 0.35
CLDN9O95484 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.21■□□□□ 0.35
CLDN9O95484 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.21■□□□□ 0.35
CLDN9O95484 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CLDN9O95484 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CLDN9O95484 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.21■□□□□ 0.35
CLDN9O95484 REXO1L11P-201ENST00000620964 1927 ntBASIC17.21■□□□□ 0.35
CLDN9O95484 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
CLDN9O95484 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.21■□□□□ 0.35
CLDN9O95484 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLDN9O95484 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.2■□□□□ 0.34
CLDN9O95484 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLDN9O95484 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CLDN9O95484 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CLDN9O95484 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CLDN9O95484 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.2■□□□□ 0.34
CLDN9O95484 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.2■□□□□ 0.34
CLDN9O95484 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.2■□□□□ 0.34
CLDN9O95484 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.2■□□□□ 0.34
CLDN9O95484 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.2■□□□□ 0.34
CLDN9O95484 AC063952.2-201ENST00000498792 1227 ntBASIC17.2■□□□□ 0.34
CLDN9O95484 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.2■□□□□ 0.34
CLDN9O95484 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.2■□□□□ 0.34
CLDN9O95484 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.2■□□□□ 0.34
CLDN9O95484 VENTXP5-201ENST00000523979 775 ntBASIC17.2■□□□□ 0.34
CLDN9O95484 AC005332.3-201ENST00000589904 676 ntBASIC17.2■□□□□ 0.34
CLDN9O95484 DFFB-212ENST00000625756 649 ntTSL 5 BASIC17.2■□□□□ 0.34
CLDN9O95484 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms