Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PHGDHO43175 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PHGDHO43175 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PHGDHO43175 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.72■□□□□ 0.43
PHGDHO43175 AL391807.1-203ENST00000604392 2365 ntBASIC17.72■□□□□ 0.43
PHGDHO43175 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.72■□□□□ 0.43
PHGDHO43175 KRT8P47-201ENST00000604727 1398 ntBASIC17.72■□□□□ 0.43
PHGDHO43175 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.72■□□□□ 0.43
PHGDHO43175 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PHGDHO43175 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.72■□□□□ 0.43
PHGDHO43175 AL136038.4-201ENST00000603606 1261 ntBASIC17.72■□□□□ 0.43
PHGDHO43175 AC140113.3-201ENST00000605663 199 ntBASIC17.72■□□□□ 0.43
PHGDHO43175 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
PHGDHO43175 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
PHGDHO43175 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.72■□□□□ 0.43
PHGDHO43175 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
PHGDHO43175 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.72■□□□□ 0.43
PHGDHO43175 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
PHGDHO43175 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
PHGDHO43175 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.72■□□□□ 0.43
PHGDHO43175 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
PHGDHO43175 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
PHGDHO43175 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.71■□□□□ 0.43
PHGDHO43175 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
PHGDHO43175 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 REXO1L11P-201ENST00000620964 1927 ntBASIC17.71■□□□□ 0.43
PHGDHO43175 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
PHGDHO43175 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
PHGDHO43175 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
PHGDHO43175 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.71■□□□□ 0.43
PHGDHO43175 SPDYE15P-201ENST00000424157 909 ntBASIC17.71■□□□□ 0.43
PHGDHO43175 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.71■□□□□ 0.43
PHGDHO43175 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PHGDHO43175 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.71■□□□□ 0.43
PHGDHO43175 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
PHGDHO43175 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
PHGDHO43175 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
PHGDHO43175 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.42
PHGDHO43175 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 AL138688.1-201ENST00000624851 1594 ntBASIC17.7■□□□□ 0.42
PHGDHO43175 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 PRORSD1P-202ENST00000563365 2154 ntBASIC17.7■□□□□ 0.42
PHGDHO43175 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PHGDHO43175 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.7■□□□□ 0.42
PHGDHO43175 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
PHGDHO43175 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PHGDHO43175 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.7■□□□□ 0.42
PHGDHO43175 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 LIN28AP1-201ENST00000429574 405 ntBASIC17.7■□□□□ 0.42
PHGDHO43175 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.7■□□□□ 0.42
PHGDHO43175 KRT18P65-201ENST00000439811 1286 ntBASIC17.7■□□□□ 0.42
PHGDHO43175 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.7■□□□□ 0.42
PHGDHO43175 ATP5G1P1-201ENST00000448724 379 ntBASIC17.7■□□□□ 0.42
PHGDHO43175 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.7■□□□□ 0.42
PHGDHO43175 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.7■□□□□ 0.42
PHGDHO43175 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.7■□□□□ 0.42
PHGDHO43175 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
PHGDHO43175 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
PHGDHO43175 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.7■□□□□ 0.42
PHGDHO43175 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.7■□□□□ 0.42
PHGDHO43175 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
PHGDHO43175 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.7■□□□□ 0.42
PHGDHO43175 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
PHGDHO43175 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PHGDHO43175 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PHGDHO43175 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.69■□□□□ 0.42
PHGDHO43175 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PHGDHO43175 HLA-J-201ENST00000462773 1622 ntBASIC17.69■□□□□ 0.42
PHGDHO43175 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PHGDHO43175 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PHGDHO43175 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms