Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC008764.6-201ENST00000595909 2069 ntBASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 MRPL3P1-201ENST00000400109 1033 ntBASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC093909.1-201ENST00000504731 1122 ntBASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AP001005.1-201ENST00000571755 1248 ntBASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AL773604.1-201ENST00000617417 272 ntBASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC023511.2-201ENST00000618803 211 ntBASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.49■□□□□ 0.39
TMX2-CTNND1H3BSU7 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 AF186996.4-201ENST00000467186 377 ntBASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 AP005901.3-202ENST00000581653 237 ntBASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC120114.3-201ENST00000611923 658 ntBASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 ABALON-201ENST00000629058 1903 ntBASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 ESPNP-201ENST00000270691 2015 ntBASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TMX2-CTNND1H3BSU7 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 LINC00896-202ENST00000609602 2128 ntBASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 AL590627.1-203ENST00000421194 1026 ntBASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 TSPY12P-201ENST00000421279 868 ntBASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 AF238378.1-201ENST00000526806 358 ntBASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 AC114341.1-201ENST00000618070 349 ntBASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TMX2-CTNND1H3BSU7 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.46■□□□□ 0.39
TMX2-CTNND1H3BSU7 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
TMX2-CTNND1H3BSU7 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TMX2-CTNND1H3BSU7 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.46■□□□□ 0.39
TMX2-CTNND1H3BSU7 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms