Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM4P50479 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM4P50479 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM4P50479 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM4P50479 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.8■□□□□ 0.92
PDLIM4P50479 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM4P50479 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
PDLIM4P50479 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM4P50479 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.79■□□□□ 0.92
PDLIM4P50479 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
PDLIM4P50479 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC20.79■□□□□ 0.92
PDLIM4P50479 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.79■□□□□ 0.92
PDLIM4P50479 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
PDLIM4P50479 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM4P50479 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM4P50479 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC20.78■□□□□ 0.92
PDLIM4P50479 RAP2CP1-202ENST00000605179 643 ntBASIC20.78■□□□□ 0.92
PDLIM4P50479 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM4P50479 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PDLIM4P50479 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PDLIM4P50479 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PDLIM4P50479 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PDLIM4P50479 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC20.77■□□□□ 0.92
PDLIM4P50479 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
PDLIM4P50479 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC20.77■□□□□ 0.92
PDLIM4P50479 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM4P50479 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
PDLIM4P50479 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC20.76■□□□□ 0.91
PDLIM4P50479 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PDLIM4P50479 DUX4L9-201ENST00000449051 1259 ntBASIC20.76■□□□□ 0.91
PDLIM4P50479 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC20.76■□□□□ 0.91
PDLIM4P50479 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PDLIM4P50479 BHLHE23-202ENST00000612929 1109 ntBASIC20.76■□□□□ 0.91
PDLIM4P50479 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PDLIM4P50479 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PDLIM4P50479 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
PDLIM4P50479 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC20.75■□□□□ 0.91
PDLIM4P50479 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM4P50479 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PDLIM4P50479 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.75■□□□□ 0.91
PDLIM4P50479 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDLIM4P50479 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC20.73■□□□□ 0.91
PDLIM4P50479 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM4P50479 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM4P50479 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PDLIM4P50479 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PDLIM4P50479 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM4P50479 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM4P50479 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM4P50479 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC20.72■□□□□ 0.91
PDLIM4P50479 AC139795.1-202ENST00000500444 432 ntBASIC20.72■□□□□ 0.91
PDLIM4P50479 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.72■□□□□ 0.91
PDLIM4P50479 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM4P50479 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM4P50479 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM4P50479 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PDLIM4P50479 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM4P50479 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM4P50479 HYI-210ENST00000486909 905 ntTSL 5 BASIC20.71■□□□□ 0.91
PDLIM4P50479 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM4P50479 AC018755.3-202ENST00000596210 929 ntBASIC20.71■□□□□ 0.91
PDLIM4P50479 MIR6765-201ENST00000614092 87 ntBASIC20.71■□□□□ 0.91
PDLIM4P50479 AC074183.2-201ENST00000623112 922 ntBASIC20.71■□□□□ 0.91
PDLIM4P50479 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM4P50479 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM4P50479 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM4P50479 WHAMMP3-201ENST00000611636 1609 ntBASIC20.71■□□□□ 0.91
PDLIM4P50479 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PDLIM4P50479 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM4P50479 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
PDLIM4P50479 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM4P50479 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDLIM4P50479 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
PDLIM4P50479 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.7■□□□□ 0.9
PDLIM4P50479 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
PDLIM4P50479 AL359504.2-201ENST00000605506 1601 ntBASIC20.69■□□□□ 0.9
PDLIM4P50479 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC20.69■□□□□ 0.9
PDLIM4P50479 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDLIM4P50479 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PDLIM4P50479 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC20.69■□□□□ 0.9
PDLIM4P50479 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.68■□□□□ 0.9
PDLIM4P50479 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM4P50479 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM4P50479 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM4P50479 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.68■□□□□ 0.9
PDLIM4P50479 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM4P50479 SPCS2P3-201ENST00000500401 656 ntBASIC20.68■□□□□ 0.9
PDLIM4P50479 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.68■□□□□ 0.9
PDLIM4P50479 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.68■□□□□ 0.9
PDLIM4P50479 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
PDLIM4P50479 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM4P50479 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
PDLIM4P50479 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
PDLIM4P50479 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
PDLIM4P50479 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC20.67■□□□□ 0.9
PDLIM4P50479 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC20.66■□□□□ 0.9
PDLIM4P50479 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM4P50479 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
PDLIM4P50479 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
PDLIM4P50479 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms