Protein–RNA interactions for Protein: P25655

CDC39, General negative regulator of transcription subunit 1, yeastyeast

Known RBP Predictions only

Length 2,108 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC39P25655 tG(GCC)G1tG(GCC)G1 71 nt5.78□□□□□ -1.48
CDC39P25655 tG(GCC)G2tG(GCC)G2 71 nt5.78□□□□□ -1.48
CDC39P25655 tG(GCC)J1tG(GCC)J1 71 nt5.78□□□□□ -1.48
CDC39P25655 SUF23tG(GCC)J2 71 nt5.78□□□□□ -1.48
CDC39P25655 tG(GCC)MtG(GCC)M 71 nt5.78□□□□□ -1.48
CDC39P25655 tG(GCC)O1tG(GCC)O1 71 nt5.78□□□□□ -1.48
CDC39P25655 SUF17tG(GCC)O2 71 nt5.78□□□□□ -1.48
CDC39P25655 tG(GCC)P1tG(GCC)P1 71 nt5.78□□□□□ -1.48
CDC39P25655 tG(GCC)P2tG(GCC)P2 71 nt5.78□□□□□ -1.48
CDC39P25655 CUP2YGL166W 678 nt5.78□□□□□ -1.48
CDC39P25655 FPR3YML074C 1236 nt5.78□□□□□ -1.48
CDC39P25655 CYB2YML054C 1776 nt5.77□□□□□ -1.49
CDC39P25655 PRE3YJL001W 648 nt5.77□□□□□ -1.49
CDC39P25655 OPI8YKR035C 642 nt5.77□□□□□ -1.49
CDC39P25655 MIX17YMR002W 471 nt5.77□□□□□ -1.49
CDC39P25655 ERG8YMR220W 1356 nt5.76□□□□□ -1.49
CDC39P25655 ATG36YJL185C 882 nt5.76□□□□□ -1.49
CDC39P25655 YGR054WYGR054W 1929 nt5.75□□□□□ -1.49
CDC39P25655 YPL102CYPL102C 303 nt5.75□□□□□ -1.49
CDC39P25655 DID2YKR035W-A 615 nt5.75□□□□□ -1.49
CDC39P25655 MCH2YKL221W 1422 nt5.74□□□□□ -1.49
CDC39P25655 FMO1YHR176W 1299 nt5.74□□□□□ -1.49
CDC39P25655 MDE1YJR024C 735 nt5.74□□□□□ -1.49
CDC39P25655 TOS6YNL300W 309 nt5.74□□□□□ -1.49
CDC39P25655 DFR1YOR236W 636 nt5.74□□□□□ -1.49
CDC39P25655 HXT13YEL069C 1695 nt5.74□□□□□ -1.49
CDC39P25655 SEC23YPR181C 2307 nt5.74□□□□□ -1.49
CDC39P25655 RTG2YGL252C 1767 nt5.74□□□□□ -1.49
CDC39P25655 YLR312CYLR312C 1197 nt5.74□□□□□ -1.49
CDC39P25655 YMR122CYMR122C 375 nt5.74□□□□□ -1.49
CDC39P25655 STT3YGL022W 2157 nt5.73□□□□□ -1.49
CDC39P25655 YHR020WYHR020W 2067 nt5.73□□□□□ -1.49
CDC39P25655 GSH1YJL101C 2037 nt5.73□□□□□ -1.49
CDC39P25655 ZRT2YLR130C 1269 nt5.73□□□□□ -1.49
CDC39P25655 RNH1YMR234W 1047 nt5.73□□□□□ -1.49
CDC39P25655 YLL066CYLL066C 3618 nt5.73□□□□□ -1.49
CDC39P25655 YLL067CYLL067C 3618 nt5.73□□□□□ -1.49
CDC39P25655 UIP5YKR044W 1332 nt5.73□□□□□ -1.49
CDC39P25655 NAS6YGR232W 687 nt5.72□□□□□ -1.49
CDC39P25655 RNH201YNL072W 924 nt5.72□□□□□ -1.49
CDC39P25655 RKI1YOR095C 777 nt5.72□□□□□ -1.49
CDC39P25655 ARE2YNR019W 1929 nt5.72□□□□□ -1.49
CDC39P25655 DSF1YEL070W 1509 nt5.72□□□□□ -1.49
CDC39P25655 YNR073CYNR073C 1509 nt5.72□□□□□ -1.49
CDC39P25655 YMR295CYMR295C 594 nt5.72□□□□□ -1.49
CDC39P25655 YBR027CYBR027C 333 nt5.72□□□□□ -1.49
CDC39P25655 DYS1YHR068W 1164 nt5.71□□□□□ -1.5
CDC39P25655 RPL31BYLR406C 342 nt5.71□□□□□ -1.5
CDC39P25655 YMR279CYMR279C 1623 nt5.71□□□□□ -1.5
CDC39P25655 KSH1YNL024C-A 219 nt5.71□□□□□ -1.5
CDC39P25655 YNL097W-AYNL097W-A 156 nt5.7□□□□□ -1.5
CDC39P25655 GPD2YOL059W 1323 nt5.7□□□□□ -1.5
CDC39P25655 YBR241CYBR241C 1467 nt5.69□□□□□ -1.5
CDC39P25655 RSP5YER125W 2430 nt5.69□□□□□ -1.5
CDC39P25655 VMA3YEL027W 483 nt5.69□□□□□ -1.5
CDC39P25655 RPL5YPL131W 894 nt5.69□□□□□ -1.5
CDC39P25655 RRP9YPR137W 1722 nt5.69□□□□□ -1.5
CDC39P25655 MSO1YNR049C 633 nt5.69□□□□□ -1.5
CDC39P25655 SGF29YCL010C 780 nt5.69□□□□□ -1.5
CDC39P25655 MOG1YJR074W 657 nt5.68□□□□□ -1.5
CDC39P25655 EMP65YER140W 1671 nt5.68□□□□□ -1.5
CDC39P25655 ADE2YOR128C 1716 nt5.68□□□□□ -1.5
CDC39P25655 ACO1YLR304C 2337 nt5.68□□□□□ -1.5
CDC39P25655 DON1YDR273W 1098 nt5.68□□□□□ -1.5
CDC39P25655 YFL013W-AYFL013W-A 804 nt5.68□□□□□ -1.5
CDC39P25655 HSP12YFL014W 330 nt5.68□□□□□ -1.5
CDC39P25655 CUE4YML101C 354 nt5.68□□□□□ -1.5
CDC39P25655 PAC2YER007W 1557 nt5.67□□□□□ -1.5
CDC39P25655 TDH2YJR009C 999 nt5.67□□□□□ -1.5
CDC39P25655 RRN10YBL025W 438 nt5.67□□□□□ -1.5
CDC39P25655 NSG2YNL156C 900 nt5.67□□□□□ -1.5
CDC39P25655 HEM14YER014W 1620 nt5.67□□□□□ -1.5
CDC39P25655 YPR204WYPR204W 3099 nt5.67□□□□□ -1.5
CDC39P25655 LDB16YCL005W 771 nt5.66□□□□□ -1.5
CDC39P25655 DOT1YDR440W 1749 nt5.66□□□□□ -1.5
CDC39P25655 MSY1YPL097W 1479 nt5.66□□□□□ -1.5
CDC39P25655 SWD1YAR003W 1281 nt5.66□□□□□ -1.5
CDC39P25655 SEN34YAR008W 828 nt5.66□□□□□ -1.5
CDC39P25655 CSL4YNL232W 879 nt5.66□□□□□ -1.5
CDC39P25655 ERG1YGR175C 1491 nt5.65□□□□□ -1.5
CDC39P25655 SRF1YDL133W 1314 nt5.65□□□□□ -1.51
CDC39P25655 PEX3YDR329C 1326 nt5.65□□□□□ -1.51
CDC39P25655 OM45YIL136W 1182 nt5.65□□□□□ -1.51
CDC39P25655 SCS7YMR272C 1155 nt5.65□□□□□ -1.51
CDC39P25655 KIN1YDR122W 3195 nt5.64□□□□□ -1.51
CDC39P25655 RFC4YOL094C 972 nt5.64□□□□□ -1.51
CDC39P25655 MPC2YHR162W 390 nt5.63□□□□□ -1.51
CDC39P25655 COX16YJL003W 357 nt5.63□□□□□ -1.51
CDC39P25655 GCN3YKR026C 918 nt5.63□□□□□ -1.51
CDC39P25655 OPI11YPR044C 354 nt5.63□□□□□ -1.51
CDC39P25655 MCM5YLR274W 2328 nt5.63□□□□□ -1.51
CDC39P25655 SIT4YDL047W 936 nt5.63□□□□□ -1.51
CDC39P25655 YDL218WYDL218W 954 nt5.63□□□□□ -1.51
CDC39P25655 PSR2YLR019W 1194 nt5.63□□□□□ -1.51
CDC39P25655 YNL040WYNL040W 1371 nt5.62□□□□□ -1.51
CDC39P25655 HVG1YER039C 750 nt5.62□□□□□ -1.51
CDC39P25655 YRB2YIL063C 984 nt5.62□□□□□ -1.51
CDC39P25655 YPR196WYPR196W 1413 nt5.62□□□□□ -1.51
CDC39P25655 ARP3YJR065C 1350 nt5.62□□□□□ -1.51
CDC39P25655 MHT1YLL062C 975 nt5.62□□□□□ -1.51
Retrieved 100 of 7,029 protein–RNA pairs in 7.9 ms