Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 FGFR3P6-201ENST00000457012 610 ntBASIC18.8■□□□□ 0.6
CDH9Q9ULB4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 AD001527.2-201ENST00000622994 785 ntBASIC18.8■□□□□ 0.6
CDH9Q9ULB4 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH9Q9ULB4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 FDX1P1-201ENST00000449115 551 ntBASIC18.79■□□□□ 0.6
CDH9Q9ULB4 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.79■□□□□ 0.6
CDH9Q9ULB4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 AC009078.2-202ENST00000463353 338 ntBASIC18.78■□□□□ 0.6
CDH9Q9ULB4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 TP73-AS1-207ENST00000624167 988 ntBASIC18.78■□□□□ 0.6
CDH9Q9ULB4 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH9Q9ULB4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CDH9Q9ULB4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms