Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SMARCAL1Q9NZC9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 LINC00167-201ENST00000530583 1419 ntBASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 AC010240.3-201ENST00000607688 395 ntBASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 AP000525.1-201ENST00000608286 694 ntBASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SMARCAL1Q9NZC9 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
SMARCAL1Q9NZC9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 PCDHB19P-201ENST00000570871 2371 ntBASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 HLA-J-201ENST00000462773 1622 ntBASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SMARCAL1Q9NZC9 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 TSPY15P-201ENST00000457163 923 ntBASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 AL353719.1-201ENST00000566847 864 ntBASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMARCAL1Q9NZC9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 AC060834.1-201ENST00000443027 2032 ntBASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMARCAL1Q9NZC9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms