Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
ABCA3Q99758 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.51■■□□□ 1.35
ABCA3Q99758 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.51■■□□□ 1.35
ABCA3Q99758 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
ABCA3Q99758 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
ABCA3Q99758 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC23.5■■□□□ 1.35
ABCA3Q99758 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
ABCA3Q99758 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC23.5■■□□□ 1.35
ABCA3Q99758 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC23.5■■□□□ 1.35
ABCA3Q99758 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
ABCA3Q99758 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC23.5■■□□□ 1.35
ABCA3Q99758 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC23.5■■□□□ 1.35
ABCA3Q99758 THTPA-204ENST00000554970 569 ntTSL 4 BASIC23.5■■□□□ 1.35
ABCA3Q99758 THTPA-206ENST00000556015 535 ntTSL 3 BASIC23.5■■□□□ 1.35
ABCA3Q99758 RN7SL204P-201ENST00000582831 262 ntBASIC23.5■■□□□ 1.35
ABCA3Q99758 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC23.5■■□□□ 1.35
ABCA3Q99758 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC23.5■■□□□ 1.35
ABCA3Q99758 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC23.5■■□□□ 1.35
ABCA3Q99758 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC23.5■■□□□ 1.35
ABCA3Q99758 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC23.5■■□□□ 1.35
ABCA3Q99758 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC23.49■■□□□ 1.35
ABCA3Q99758 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC23.49■■□□□ 1.35
ABCA3Q99758 AC140658.5-201ENST00000438532 169 ntBASIC23.49■■□□□ 1.35
ABCA3Q99758 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC23.49■■□□□ 1.35
ABCA3Q99758 RPL28-209ENST00000560055 670 ntTSL 3 BASIC23.49■■□□□ 1.35
ABCA3Q99758 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA3Q99758 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.49■■□□□ 1.35
ABCA3Q99758 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC23.49■■□□□ 1.35
ABCA3Q99758 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA3Q99758 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.49■■□□□ 1.35
ABCA3Q99758 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA3Q99758 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA3Q99758 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC23.49■■□□□ 1.35
ABCA3Q99758 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA3Q99758 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
ABCA3Q99758 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC23.48■■□□□ 1.35
ABCA3Q99758 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA3Q99758 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA3Q99758 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA3Q99758 DDX43P3-201ENST00000441064 443 ntBASIC23.48■■□□□ 1.35
ABCA3Q99758 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC23.48■■□□□ 1.35
ABCA3Q99758 DUT-210ENST00000559935 569 ntTSL 3 BASIC23.48■■□□□ 1.35
ABCA3Q99758 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC23.48■■□□□ 1.35
ABCA3Q99758 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA3Q99758 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC23.48■■□□□ 1.35
ABCA3Q99758 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
ABCA3Q99758 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA3Q99758 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA3Q99758 BX276092.7-203ENST00000637198 1536 ntBASIC23.48■■□□□ 1.35
ABCA3Q99758 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.48■■□□□ 1.35
ABCA3Q99758 WRB-204ENST00000398753 699 ntTSL 3 BASIC23.47■■□□□ 1.35
ABCA3Q99758 FAM207CP-201ENST00000443486 507 ntBASIC23.47■■□□□ 1.35
ABCA3Q99758 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC23.47■■□□□ 1.35
ABCA3Q99758 AC107918.2-201ENST00000530817 355 ntBASIC23.47■■□□□ 1.35
ABCA3Q99758 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC23.47■■□□□ 1.35
ABCA3Q99758 ADM-207ENST00000530439 1839 ntTSL 2 BASIC23.47■■□□□ 1.35
ABCA3Q99758 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
ABCA3Q99758 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA3Q99758 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
ABCA3Q99758 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA3Q99758 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
ABCA3Q99758 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC23.47■■□□□ 1.35
ABCA3Q99758 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA3Q99758 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA3Q99758 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA3Q99758 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA3Q99758 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC23.47■■□□□ 1.35
ABCA3Q99758 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC23.47■■□□□ 1.35
ABCA3Q99758 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
ABCA3Q99758 AC026120.1-201ENST00000611536 926 ntBASIC23.47■■□□□ 1.35
ABCA3Q99758 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
ABCA3Q99758 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC23.47■■□□□ 1.35
ABCA3Q99758 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.46■■□□□ 1.35
ABCA3Q99758 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA3Q99758 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC23.46■■□□□ 1.35
ABCA3Q99758 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
ABCA3Q99758 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA3Q99758 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.46■■□□□ 1.35
ABCA3Q99758 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA3Q99758 CENPM-205ENST00000404067 905 ntTSL 3 BASIC23.46■■□□□ 1.35
ABCA3Q99758 PTGES2-AS1-201ENST00000443493 2100 ntBASIC23.46■■□□□ 1.35
ABCA3Q99758 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC23.46■■□□□ 1.35
ABCA3Q99758 SLC25A6P2-201ENST00000497974 877 ntBASIC23.46■■□□□ 1.35
ABCA3Q99758 DUTP2-201ENST00000519164 463 ntBASIC23.46■■□□□ 1.35
ABCA3Q99758 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA3Q99758 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA3Q99758 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC23.46■■□□□ 1.35
ABCA3Q99758 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC23.46■■□□□ 1.35
ABCA3Q99758 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
ABCA3Q99758 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC23.46■■□□□ 1.35
ABCA3Q99758 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC23.46■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms