Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDX2Q99626 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.46■□□□□ 0.55
CDX2Q99626 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDX2Q99626 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDX2Q99626 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
CDX2Q99626 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CDX2Q99626 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.46■□□□□ 0.54
CDX2Q99626 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CDX2Q99626 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.45■□□□□ 0.54
CDX2Q99626 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC18.45■□□□□ 0.54
CDX2Q99626 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.45■□□□□ 0.54
CDX2Q99626 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.45■□□□□ 0.54
CDX2Q99626 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.45■□□□□ 0.54
CDX2Q99626 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CDX2Q99626 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CDX2Q99626 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CDX2Q99626 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDX2Q99626 AC092667.1-201ENST00000434301 2586 ntBASIC18.44■□□□□ 0.54
CDX2Q99626 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 AC132938.6-201ENST00000623828 1655 ntBASIC18.44■□□□□ 0.54
CDX2Q99626 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CDX2Q99626 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.44■□□□□ 0.54
CDX2Q99626 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 LINC00982-205ENST00000420957 435 ntBASIC18.44■□□□□ 0.54
CDX2Q99626 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.44■□□□□ 0.54
CDX2Q99626 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.44■□□□□ 0.54
CDX2Q99626 SPCS2P4-201ENST00000436160 681 ntBASIC18.44■□□□□ 0.54
CDX2Q99626 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC18.44■□□□□ 0.54
CDX2Q99626 GIMAP3P-201ENST00000495150 836 ntBASIC18.44■□□□□ 0.54
CDX2Q99626 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC18.44■□□□□ 0.54
CDX2Q99626 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC18.44■□□□□ 0.54
CDX2Q99626 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CDX2Q99626 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
CDX2Q99626 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDX2Q99626 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
CDX2Q99626 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.43■□□□□ 0.54
CDX2Q99626 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
CDX2Q99626 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
CDX2Q99626 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 AC140658.5-201ENST00000438532 169 ntBASIC18.43■□□□□ 0.54
CDX2Q99626 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.43■□□□□ 0.54
CDX2Q99626 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.43■□□□□ 0.54
CDX2Q99626 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.43■□□□□ 0.54
CDX2Q99626 MIR6805-201ENST00000615055 62 ntBASIC18.43■□□□□ 0.54
CDX2Q99626 MIR6080-201ENST00000617359 66 ntBASIC18.43■□□□□ 0.54
CDX2Q99626 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC18.43■□□□□ 0.54
CDX2Q99626 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.43■□□□□ 0.54
CDX2Q99626 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CDX2Q99626 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDX2Q99626 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CDX2Q99626 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
CDX2Q99626 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.42■□□□□ 0.54
CDX2Q99626 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms