Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC12.74□□□□□ -0.37
PRKDCP78527 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC12.74□□□□□ -0.37
PRKDCP78527 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC12.74□□□□□ -0.37
PRKDCP78527 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC12.74□□□□□ -0.37
PRKDCP78527 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC12.74□□□□□ -0.37
PRKDCP78527 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC12.74□□□□□ -0.37
PRKDCP78527 AL139099.5-201ENST00000635274 300 ntBASIC12.74□□□□□ -0.37
PRKDCP78527 FUT8-AS1-201ENST00000621019 1521 ntBASIC12.74□□□□□ -0.37
PRKDCP78527 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC12.74□□□□□ -0.37
PRKDCP78527 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
PRKDCP78527 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
PRKDCP78527 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
PRKDCP78527 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
PRKDCP78527 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
PRKDCP78527 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 COX5A-202ENST00000562233 441 ntTSL 3 BASIC12.74□□□□□ -0.37
PRKDCP78527 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC12.74□□□□□ -0.37
PRKDCP78527 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 AL157384.1-201ENST00000445995 2473 ntBASIC12.74□□□□□ -0.37
PRKDCP78527 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC12.74□□□□□ -0.37
PRKDCP78527 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
PRKDCP78527 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC12.74□□□□□ -0.37
PRKDCP78527 FAM86MP-201ENST00000340703 885 ntBASIC12.73□□□□□ -0.37
PRKDCP78527 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.73□□□□□ -0.37
PRKDCP78527 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC12.73□□□□□ -0.37
PRKDCP78527 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC12.73□□□□□ -0.37
PRKDCP78527 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 SPDYE7P-202ENST00000420373 878 ntBASIC12.73□□□□□ -0.37
PRKDCP78527 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 NAT9-224ENST00000583757 583 ntTSL 3 BASIC12.73□□□□□ -0.37
PRKDCP78527 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
PRKDCP78527 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC12.73□□□□□ -0.37
PRKDCP78527 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC12.73□□□□□ -0.37
PRKDCP78527 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC12.73□□□□□ -0.37
PRKDCP78527 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
PRKDCP78527 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
PRKDCP78527 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 FALEC-201ENST00000416894 566 ntTSL 3 BASIC12.73□□□□□ -0.37
PRKDCP78527 TMEM14DP-201ENST00000422205 345 ntBASIC12.73□□□□□ -0.37
PRKDCP78527 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC12.73□□□□□ -0.37
PRKDCP78527 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
PRKDCP78527 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC12.73□□□□□ -0.37
PRKDCP78527 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
PRKDCP78527 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
PRKDCP78527 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 AC002056.1-201ENST00000395613 760 ntBASIC12.72□□□□□ -0.37
PRKDCP78527 AC005237.2-201ENST00000434368 219 ntBASIC12.72□□□□□ -0.37
PRKDCP78527 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC12.72□□□□□ -0.37
PRKDCP78527 AC009407.1-201ENST00000568958 598 ntBASIC12.72□□□□□ -0.37
PRKDCP78527 AC132938.2-201ENST00000579188 680 ntBASIC12.72□□□□□ -0.37
PRKDCP78527 AC099568.2-201ENST00000609194 695 ntBASIC12.72□□□□□ -0.37
PRKDCP78527 AL591163.1-201ENST00000641757 987 ntBASIC12.72□□□□□ -0.37
PRKDCP78527 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC12.72□□□□□ -0.37
PRKDCP78527 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 PTCHD3P3-201ENST00000403073 906 ntBASIC12.72□□□□□ -0.37
PRKDCP78527 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.72□□□□□ -0.37
PRKDCP78527 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC12.72□□□□□ -0.37
PRKDCP78527 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
PRKDCP78527 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC12.72□□□□□ -0.37
PRKDCP78527 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.72□□□□□ -0.37
PRKDCP78527 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC12.72□□□□□ -0.37
PRKDCP78527 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms