Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA4P78363 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ABCA4P78363 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA4P78363 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 SNCG-201ENST00000348795 684 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA4P78363 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ABCA4P78363 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA4P78363 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ABCA4P78363 HCG4B-203ENST00000450128 991 ntBASIC15.29■□□□□ 0.04
ABCA4P78363 PRYP5-201ENST00000451909 266 ntBASIC15.29■□□□□ 0.04
ABCA4P78363 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.29■□□□□ 0.04
ABCA4P78363 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.29■□□□□ 0.04
ABCA4P78363 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA4P78363 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ABCA4P78363 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA4P78363 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA4P78363 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA4P78363 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA4P78363 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ABCA4P78363 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA4P78363 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 BEX3-201ENST00000361298 921 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ABCA4P78363 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.28■□□□□ 0.04
ABCA4P78363 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC15.28■□□□□ 0.04
ABCA4P78363 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.28■□□□□ 0.04
ABCA4P78363 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.28■□□□□ 0.04
ABCA4P78363 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC15.28■□□□□ 0.04
ABCA4P78363 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC15.28■□□□□ 0.04
ABCA4P78363 AC007967.3-201ENST00000434308 558 ntBASIC15.28■□□□□ 0.04
ABCA4P78363 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 RFPL4AP1-201ENST00000530883 850 ntBASIC15.28■□□□□ 0.04
ABCA4P78363 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.28■□□□□ 0.04
ABCA4P78363 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.28■□□□□ 0.04
ABCA4P78363 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ABCA4P78363 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA4P78363 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
ABCA4P78363 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA4P78363 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA4P78363 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC15.27■□□□□ 0.04
ABCA4P78363 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA4P78363 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.27■□□□□ 0.04
ABCA4P78363 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.27■□□□□ 0.04
ABCA4P78363 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.27■□□□□ 0.04
ABCA4P78363 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC15.27■□□□□ 0.04
ABCA4P78363 RNA5SP416-201ENST00000516838 111 ntBASIC15.27■□□□□ 0.04
ABCA4P78363 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.27■□□□□ 0.04
ABCA4P78363 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA4P78363 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms