Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
LMO4P61968 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.58□□□□□ -0.08
LMO4P61968 AC109462.3-201ENST00000573934 613 ntBASIC14.58□□□□□ -0.08
LMO4P61968 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC14.58□□□□□ -0.08
LMO4P61968 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 MIR1199-201ENST00000621445 119 ntBASIC14.58□□□□□ -0.08
LMO4P61968 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.58□□□□□ -0.08
LMO4P61968 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 PC-208ENST00000529047 1607 ntTSL 3 BASIC14.58□□□□□ -0.08
LMO4P61968 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
LMO4P61968 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.58□□□□□ -0.08
LMO4P61968 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
LMO4P61968 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LMO4P61968 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC14.58□□□□□ -0.08
LMO4P61968 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.08
LMO4P61968 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
LMO4P61968 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.57□□□□□ -0.08
LMO4P61968 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC14.57□□□□□ -0.08
LMO4P61968 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 AL020996.1-203ENST00000536896 2307 ntBASIC14.57□□□□□ -0.08
LMO4P61968 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 AC148477.5-201ENST00000625164 1645 ntBASIC14.57□□□□□ -0.08
LMO4P61968 AC003669.1-201ENST00000334569 611 ntBASIC14.57□□□□□ -0.08
LMO4P61968 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 MED15P5-201ENST00000423150 992 ntBASIC14.57□□□□□ -0.08
LMO4P61968 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.57□□□□□ -0.08
LMO4P61968 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC14.57□□□□□ -0.08
LMO4P61968 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC14.57□□□□□ -0.08
LMO4P61968 ETFA-208ENST00000559602 792 ntTSL 3 BASIC14.57□□□□□ -0.08
LMO4P61968 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.57□□□□□ -0.08
LMO4P61968 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
LMO4P61968 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
LMO4P61968 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC14.57□□□□□ -0.08
LMO4P61968 AC139530.3-201ENST00000620344 690 ntBASIC14.57□□□□□ -0.08
LMO4P61968 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC14.57□□□□□ -0.08
LMO4P61968 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.57□□□□□ -0.08
LMO4P61968 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
LMO4P61968 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LMO4P61968 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC14.57□□□□□ -0.08
LMO4P61968 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.57□□□□□ -0.08
LMO4P61968 AC004408.2-201ENST00000623613 2777 ntBASIC14.56□□□□□ -0.08
LMO4P61968 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
LMO4P61968 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
LMO4P61968 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LMO4P61968 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 AC087289.5-201ENST00000586076 3175 ntBASIC14.56□□□□□ -0.08
LMO4P61968 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC14.56□□□□□ -0.08
LMO4P61968 KLF4P1-201ENST00000412782 1185 ntBASIC14.56□□□□□ -0.08
LMO4P61968 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 AC009947.1-201ENST00000444350 727 ntBASIC14.56□□□□□ -0.08
LMO4P61968 SIGLEC30P-201ENST00000455569 941 ntBASIC14.56□□□□□ -0.08
LMO4P61968 AC136632.2-201ENST00000512891 861 ntBASIC14.56□□□□□ -0.08
LMO4P61968 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC14.56□□□□□ -0.08
LMO4P61968 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.56□□□□□ -0.08
LMO4P61968 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.56□□□□□ -0.08
LMO4P61968 AC092865.5-201ENST00000545435 363 ntBASIC14.56□□□□□ -0.08
LMO4P61968 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 PGM5P2-202ENST00000637225 1043 ntBASIC14.56□□□□□ -0.08
LMO4P61968 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
LMO4P61968 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
LMO4P61968 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
LMO4P61968 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms