Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
NEK3P51956 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.38■□□□□ 0.53
NEK3P51956 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NEK3P51956 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
NEK3P51956 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.37■□□□□ 0.53
NEK3P51956 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.37■□□□□ 0.53
NEK3P51956 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.37■□□□□ 0.53
NEK3P51956 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC18.37■□□□□ 0.53
NEK3P51956 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.37■□□□□ 0.53
NEK3P51956 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.37■□□□□ 0.53
NEK3P51956 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 AC090616.6-201ENST00000582640 721 ntBASIC18.37■□□□□ 0.53
NEK3P51956 IL11-204ENST00000590625 1028 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.37■□□□□ 0.53
NEK3P51956 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
NEK3P51956 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
NEK3P51956 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
NEK3P51956 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.36■□□□□ 0.53
NEK3P51956 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.36■□□□□ 0.53
NEK3P51956 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.36■□□□□ 0.53
NEK3P51956 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.36■□□□□ 0.53
NEK3P51956 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.36■□□□□ 0.53
NEK3P51956 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.36■□□□□ 0.53
NEK3P51956 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
NEK3P51956 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
NEK3P51956 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.36■□□□□ 0.53
NEK3P51956 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.36■□□□□ 0.53
NEK3P51956 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.35■□□□□ 0.53
NEK3P51956 SDHAP2-201ENST00000455183 2001 ntBASIC18.35■□□□□ 0.53
NEK3P51956 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
NEK3P51956 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.35■□□□□ 0.53
NEK3P51956 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
NEK3P51956 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.35■□□□□ 0.53
NEK3P51956 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.35■□□□□ 0.53
NEK3P51956 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
NEK3P51956 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 AL353692.3-201ENST00000407031 1396 ntBASIC18.35■□□□□ 0.53
NEK3P51956 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
NEK3P51956 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.35■□□□□ 0.53
NEK3P51956 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.35■□□□□ 0.53
NEK3P51956 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.35■□□□□ 0.53
NEK3P51956 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.35■□□□□ 0.53
NEK3P51956 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.35■□□□□ 0.53
NEK3P51956 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.35■□□□□ 0.53
NEK3P51956 DUSP5P1-201ENST00000441325 1139 ntBASIC18.35■□□□□ 0.53
NEK3P51956 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms