Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 AL450344.3-201ENST00000430770 378 ntTSL 3 BASIC19.12■□□□□ 0.65
HOXD11P31277 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HOXD11P31277 PRKG1-AS1-203ENST00000452247 886 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXD11P31277 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC19.12■□□□□ 0.65
HOXD11P31277 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC19.12■□□□□ 0.65
HOXD11P31277 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXD11P31277 SAA3P-202ENST00000534768 642 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD11P31277 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD11P31277 AC010809.2-201ENST00000560404 964 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXD11P31277 SPCS2P1-201ENST00000561636 679 ntBASIC19.12■□□□□ 0.65
HOXD11P31277 AC007728.2-202ENST00000567728 1150 ntTSL 3 BASIC19.12■□□□□ 0.65
HOXD11P31277 NAA60-220ENST00000573580 758 ntTSL 4 BASIC19.12■□□□□ 0.65
HOXD11P31277 MIR4801-201ENST00000582704 82 ntBASIC19.12■□□□□ 0.65
HOXD11P31277 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
HOXD11P31277 ZNF738-203ENST00000594245 1086 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXD11P31277 AC009812.1-201ENST00000605948 1059 ntBASIC19.12■□□□□ 0.65
HOXD11P31277 AL035252.4-201ENST00000624174 288 ntBASIC19.12■□□□□ 0.65
HOXD11P31277 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD11P31277 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.12■□□□□ 0.65
HOXD11P31277 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXD11P31277 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD11P31277 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HOXD11P31277 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.12■□□□□ 0.65
HOXD11P31277 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
HOXD11P31277 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 AC106754.1-201ENST00000562632 1513 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 MTND4P29-201ENST00000503122 1372 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 AC063926.2-201ENST00000623766 1308 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 RNU1-38P-201ENST00000362817 144 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 FKBP1A-202ENST00000381719 747 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 ANKRD30BL-202ENST00000409867 1251 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 USP32P3-201ENST00000413270 1174 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 OFD1P11Y-201ENST00000418213 1177 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 TRGC2-201ENST00000436911 1013 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
HOXD11P31277 ZNF195-208ENST00000438262 1018 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 LINC00271-203ENST00000438618 1202 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 AC046143.1-201ENST00000447139 972 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD11P31277 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 AP002498.1-201ENST00000530190 568 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD11P31277 AC124319.1-201ENST00000576808 653 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 GMFG-210ENST00000601387 497 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 AC121761.2-201ENST00000617300 689 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 ORC5-208ENST00000626700 344 ntTSL 3 BASIC19.11■□□□□ 0.65
HOXD11P31277 LINC01739-204ENST00000641712 1005 ntBASIC19.11■□□□□ 0.65
HOXD11P31277 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD11P31277 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.11■□□□□ 0.65
HOXD11P31277 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.11■□□□□ 0.65
HOXD11P31277 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HOXD11P31277 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXD11P31277 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXD11P31277 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXD11P31277 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC19.1■□□□□ 0.65
HOXD11P31277 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
HOXD11P31277 NXT2-204ENST00000372107 937 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXD11P31277 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXD11P31277 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 IMP4-203ENST00000409935 958 ntTSL 5 BASIC19.1■□□□□ 0.65
HOXD11P31277 Y_RNA.619-201ENST00000410951 90 ntBASIC19.1■□□□□ 0.65
HOXD11P31277 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.1■□□□□ 0.65
HOXD11P31277 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXD11P31277 AL359541.1-201ENST00000431097 575 ntTSL 3 BASIC19.1■□□□□ 0.65
HOXD11P31277 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC19.1■□□□□ 0.65
HOXD11P31277 CNTFR-AS1-201ENST00000436360 892 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC19.1■□□□□ 0.65
HOXD11P31277 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HOXD11P31277 AF186996.4-201ENST00000467186 377 ntBASIC19.1■□□□□ 0.65
HOXD11P31277 LAMTOR3P2-201ENST00000504479 232 ntBASIC19.1■□□□□ 0.65
HOXD11P31277 C1GALT1P2-201ENST00000510813 1104 ntBASIC19.1■□□□□ 0.65
HOXD11P31277 IKBKB-223ENST00000522147 954 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms