Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL590326.2-201ENST00000625139 305 ntBASIC13.61□□□□□ -0.23
HLA-DMBP28068 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 AC099398.1-201ENST00000567919 2776 ntBASIC13.6□□□□□ -0.23
HLA-DMBP28068 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 USF2-205ENST00000594064 1179 ntTSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 AC073508.3-201ENST00000619697 1419 ntBASIC13.6□□□□□ -0.23
HLA-DMBP28068 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 AL157888.1-201ENST00000631930 593 ntBASIC13.6□□□□□ -0.23
HLA-DMBP28068 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 LGALS8-AS1-201ENST00000487567 1457 ntBASIC13.6□□□□□ -0.23
HLA-DMBP28068 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.6□□□□□ -0.23
HLA-DMBP28068 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HLA-DMBP28068 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DMBP28068 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DMBP28068 MIR3917-201ENST00000580971 93 ntBASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms