Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
MMP3P08254 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
MMP3P08254 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP3P08254 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MMP3P08254 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP3P08254 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MMP3P08254 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP3P08254 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.63■□□□□ 0.73
MMP3P08254 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
MMP3P08254 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
MMP3P08254 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.63■□□□□ 0.73
MMP3P08254 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.63■□□□□ 0.73
MMP3P08254 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.63■□□□□ 0.73
MMP3P08254 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
MMP3P08254 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
MMP3P08254 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.63■□□□□ 0.73
MMP3P08254 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
MMP3P08254 DDX43P3-201ENST00000441064 443 ntBASIC19.63■□□□□ 0.73
MMP3P08254 KRT18P2-201ENST00000447938 1258 ntBASIC19.63■□□□□ 0.73
MMP3P08254 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.63■□□□□ 0.73
MMP3P08254 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.63■□□□□ 0.73
MMP3P08254 STK25P1-201ENST00000585406 838 ntBASIC19.63■□□□□ 0.73
MMP3P08254 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
MMP3P08254 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
MMP3P08254 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
MMP3P08254 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.63■□□□□ 0.73
MMP3P08254 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
MMP3P08254 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MMP3P08254 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
MMP3P08254 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.62■□□□□ 0.73
MMP3P08254 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.62■□□□□ 0.73
MMP3P08254 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.62■□□□□ 0.73
MMP3P08254 AC108073.2-201ENST00000464002 357 ntBASIC19.62■□□□□ 0.73
MMP3P08254 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.62■□□□□ 0.73
MMP3P08254 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC19.62■□□□□ 0.73
MMP3P08254 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.62■□□□□ 0.73
MMP3P08254 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.62■□□□□ 0.73
MMP3P08254 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC19.62■□□□□ 0.73
MMP3P08254 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.62■□□□□ 0.73
MMP3P08254 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.62■□□□□ 0.73
MMP3P08254 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
MMP3P08254 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
MMP3P08254 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
MMP3P08254 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP3P08254 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
MMP3P08254 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
MMP3P08254 AC093503.3-201ENST00000624917 2352 ntBASIC19.61■□□□□ 0.73
MMP3P08254 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP3P08254 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
MMP3P08254 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP3P08254 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP3P08254 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.61■□□□□ 0.73
MMP3P08254 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.61■□□□□ 0.73
MMP3P08254 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
MMP3P08254 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.61■□□□□ 0.73
MMP3P08254 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.61■□□□□ 0.73
MMP3P08254 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP3P08254 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC19.61■□□□□ 0.73
MMP3P08254 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
MMP3P08254 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
MMP3P08254 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.61■□□□□ 0.73
MMP3P08254 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
MMP3P08254 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
MMP3P08254 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.6■□□□□ 0.73
MMP3P08254 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.6■□□□□ 0.73
MMP3P08254 AC004967.1-201ENST00000453589 447 ntBASIC19.6■□□□□ 0.73
MMP3P08254 RPS15P9-201ENST00000494093 319 ntBASIC19.6■□□□□ 0.73
MMP3P08254 STK19B-204ENST00000512515 211 ntBASIC19.6■□□□□ 0.73
MMP3P08254 IGHV3-65-201ENST00000523210 341 ntBASIC19.6■□□□□ 0.73
MMP3P08254 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.6■□□□□ 0.73
MMP3P08254 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.6■□□□□ 0.73
MMP3P08254 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
MMP3P08254 REXO1L9P-201ENST00000604264 2108 ntBASIC19.6■□□□□ 0.73
MMP3P08254 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
MMP3P08254 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.6■□□□□ 0.73
MMP3P08254 BX323043.1-201ENST00000641006 1765 ntBASIC19.6■□□□□ 0.73
MMP3P08254 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
MMP3P08254 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
MMP3P08254 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP3P08254 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
MMP3P08254 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP3P08254 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.59■□□□□ 0.73
MMP3P08254 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
MMP3P08254 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms