Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.05■□□□□ 0.16
HLA-DPB1P04440 CA15P1-201ENST00000481698 905 ntBASIC16.05■□□□□ 0.16
HLA-DPB1P04440 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 NAPSB-206ENST00000562112 1266 ntBASIC16.05■□□□□ 0.16
HLA-DPB1P04440 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DPB1P04440 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 FER1L4-210ENST00000615531 5998 ntBASIC16.04■□□□□ 0.16
HLA-DPB1P04440 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 KRT8P50-201ENST00000562022 1438 ntBASIC16.04■□□□□ 0.16
HLA-DPB1P04440 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 AC010947.1-201ENST00000623454 693 ntBASIC16.04■□□□□ 0.16
HLA-DPB1P04440 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 AC133963.1-201ENST00000504166 1679 ntBASIC16.04■□□□□ 0.16
HLA-DPB1P04440 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HLA-DPB1P04440 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 GPAT2P1-201ENST00000444924 1672 ntBASIC16.03■□□□□ 0.16
HLA-DPB1P04440 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 INGX-201ENST00000359239 846 ntBASIC16.03■□□□□ 0.16
HLA-DPB1P04440 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 SLC25A1P2-201ENST00000430693 912 ntBASIC16.03■□□□□ 0.16
HLA-DPB1P04440 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DPB1P04440 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DPB1P04440 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DPB1P04440 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DPB1P04440 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms