Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.26■□□□□ 0.67
RNF40O75150 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 AC018695.7-201ENST00000624587 2492 ntBASIC19.26■□□□□ 0.67
RNF40O75150 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF40O75150 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.26■□□□□ 0.67
RNF40O75150 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.26■□□□□ 0.67
RNF40O75150 AC092597.1-201ENST00000487352 616 ntBASIC19.26■□□□□ 0.67
RNF40O75150 AC034232.1-201ENST00000506026 1064 ntBASIC19.26■□□□□ 0.67
RNF40O75150 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.26■□□□□ 0.67
RNF40O75150 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.26■□□□□ 0.67
RNF40O75150 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.26■□□□□ 0.67
RNF40O75150 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
RNF40O75150 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
RNF40O75150 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.26■□□□□ 0.67
RNF40O75150 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
RNF40O75150 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RNF40O75150 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
RNF40O75150 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
RNF40O75150 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RNF40O75150 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RNF40O75150 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RNF40O75150 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 PP12613-201ENST00000424958 2230 ntBASIC19.25■□□□□ 0.67
RNF40O75150 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RNF40O75150 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF40O75150 NKILA-202ENST00000614771 2598 ntBASIC19.25■□□□□ 0.67
RNF40O75150 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.25■□□□□ 0.67
RNF40O75150 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.25■□□□□ 0.67
RNF40O75150 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
RNF40O75150 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 NPAP1P7-201ENST00000613027 823 ntBASIC19.25■□□□□ 0.67
RNF40O75150 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RNF40O75150 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.25■□□□□ 0.67
RNF40O75150 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
RNF40O75150 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
RNF40O75150 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RNF40O75150 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
RNF40O75150 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RNF40O75150 GPAT2P1-201ENST00000444924 1672 ntBASIC19.24■□□□□ 0.67
RNF40O75150 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
RNF40O75150 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 AC011676.5-201ENST00000624864 2660 ntBASIC19.24■□□□□ 0.67
RNF40O75150 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF40O75150 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.24■□□□□ 0.67
RNF40O75150 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF40O75150 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 AC024243.1-201ENST00000609234 778 ntBASIC19.24■□□□□ 0.67
RNF40O75150 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.24■□□□□ 0.67
RNF40O75150 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.24■□□□□ 0.67
RNF40O75150 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
RNF40O75150 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 135.4 ms