Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CACNA1FO60840 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC22.32■■□□□ 1.16
CACNA1FO60840 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CACNA1FO60840 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CACNA1FO60840 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC22.31■■□□□ 1.16
CACNA1FO60840 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC22.31■■□□□ 1.16
CACNA1FO60840 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC22.31■■□□□ 1.16
CACNA1FO60840 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC22.31■■□□□ 1.16
CACNA1FO60840 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC22.31■■□□□ 1.16
CACNA1FO60840 AC012640.2-201ENST00000561606 901 ntBASIC22.31■■□□□ 1.16
CACNA1FO60840 STK25P1-201ENST00000585406 838 ntBASIC22.31■■□□□ 1.16
CACNA1FO60840 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.31■■□□□ 1.16
CACNA1FO60840 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CACNA1FO60840 PODN-203ENST00000395871 2744 ntTSL 5 BASIC22.31■■□□□ 1.16
CACNA1FO60840 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 AMT-250ENST00000637682 1823 ntTSL 5 BASIC22.31■■□□□ 1.16
CACNA1FO60840 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CACNA1FO60840 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1FO60840 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1FO60840 SPDYE21P-201ENST00000413323 827 ntBASIC22.3■■□□□ 1.16
CACNA1FO60840 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC22.3■■□□□ 1.16
CACNA1FO60840 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC22.3■■□□□ 1.16
CACNA1FO60840 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1FO60840 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1FO60840 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC22.3■■□□□ 1.16
CACNA1FO60840 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC22.3■■□□□ 1.16
CACNA1FO60840 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1FO60840 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC22.3■■□□□ 1.16
CACNA1FO60840 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC22.3■■□□□ 1.16
CACNA1FO60840 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC22.3■■□□□ 1.16
CACNA1FO60840 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC22.3■■□□□ 1.16
CACNA1FO60840 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC22.3■■□□□ 1.16
CACNA1FO60840 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC22.3■■□□□ 1.16
CACNA1FO60840 RPS29-206ENST00000557111 488 ntTSL 2 BASIC22.3■■□□□ 1.16
CACNA1FO60840 PNMT-203ENST00000581428 677 ntTSL 2 BASIC22.3■■□□□ 1.16
CACNA1FO60840 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CACNA1FO60840 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC22.3■■□□□ 1.16
CACNA1FO60840 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CACNA1FO60840 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC22.3■■□□□ 1.16
CACNA1FO60840 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1FO60840 AL031284.1-201ENST00000419297 478 ntBASIC22.29■■□□□ 1.16
CACNA1FO60840 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC22.29■■□□□ 1.16
CACNA1FO60840 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC22.29■■□□□ 1.16
CACNA1FO60840 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1FO60840 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
CACNA1FO60840 AC012317.2-201ENST00000623305 2251 ntBASIC22.29■■□□□ 1.16
CACNA1FO60840 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1FO60840 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC22.29■■□□□ 1.16
CACNA1FO60840 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC22.29■■□□□ 1.16
CACNA1FO60840 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC22.29■■□□□ 1.16
CACNA1FO60840 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1FO60840 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1FO60840 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CACNA1FO60840 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CACNA1FO60840 AL020989.1-201ENST00000422979 469 ntBASIC22.29■■□□□ 1.16
CACNA1FO60840 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC22.29■■□□□ 1.16
CACNA1FO60840 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC22.29■■□□□ 1.16
CACNA1FO60840 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CACNA1FO60840 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
CACNA1FO60840 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CACNA1FO60840 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CACNA1FO60840 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC22.28■■□□□ 1.16
CACNA1FO60840 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
CACNA1FO60840 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC22.28■■□□□ 1.16
CACNA1FO60840 MSRA-206ENST00000521209 814 ntTSL 3 BASIC22.28■■□□□ 1.16
CACNA1FO60840 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC22.28■■□□□ 1.16
CACNA1FO60840 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CACNA1FO60840 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CACNA1FO60840 GID4-202ENST00000376345 1391 ntTSL 3 BASIC22.27■■□□□ 1.16
CACNA1FO60840 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC22.27■■□□□ 1.16
CACNA1FO60840 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CACNA1FO60840 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC22.27■■□□□ 1.16
CACNA1FO60840 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 LAGE3P1-201ENST00000425356 484 ntBASIC22.27■■□□□ 1.16
CACNA1FO60840 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC22.27■■□□□ 1.16
CACNA1FO60840 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC22.27■■□□□ 1.16
CACNA1FO60840 AC107918.4-202ENST00000641623 219 ntBASIC22.27■■□□□ 1.16
CACNA1FO60840 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
CACNA1FO60840 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CACNA1FO60840 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC22.27■■□□□ 1.16
CACNA1FO60840 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms