Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HDAC3O15379 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HDAC3O15379 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HDAC3O15379 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
HDAC3O15379 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HDAC3O15379 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC3O15379 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.36■□□□□ 0.37
HDAC3O15379 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HDAC3O15379 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC3O15379 SEC1P-202ENST00000473944 940 ntBASIC17.36■□□□□ 0.37
HDAC3O15379 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.36■□□□□ 0.37
HDAC3O15379 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 AC026471.5-201ENST00000615068 467 ntBASIC17.36■□□□□ 0.37
HDAC3O15379 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.36■□□□□ 0.37
HDAC3O15379 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC3O15379 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
HDAC3O15379 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.36■□□□□ 0.37
HDAC3O15379 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HDAC3O15379 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC3O15379 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.36■□□□□ 0.37
HDAC3O15379 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HDAC3O15379 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
HDAC3O15379 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC3O15379 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC3O15379 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HDAC3O15379 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.35■□□□□ 0.37
HDAC3O15379 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC3O15379 DDX43P3-201ENST00000441064 443 ntBASIC17.35■□□□□ 0.37
HDAC3O15379 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.35■□□□□ 0.37
HDAC3O15379 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC3O15379 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.35■□□□□ 0.37
HDAC3O15379 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HDAC3O15379 AC116562.4-202ENST00000641738 218 ntBASIC17.35■□□□□ 0.37
HDAC3O15379 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
HDAC3O15379 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC17.35■□□□□ 0.37
HDAC3O15379 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HDAC3O15379 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.35■□□□□ 0.37
HDAC3O15379 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
HDAC3O15379 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC3O15379 AC007663.1-201ENST00000438948 1240 ntBASIC17.34■□□□□ 0.37
HDAC3O15379 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC3O15379 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.34■□□□□ 0.37
HDAC3O15379 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.34■□□□□ 0.37
HDAC3O15379 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HDAC3O15379 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.34■□□□□ 0.37
HDAC3O15379 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HDAC3O15379 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HDAC3O15379 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HDAC3O15379 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.34■□□□□ 0.37
HDAC3O15379 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.33■□□□□ 0.37
HDAC3O15379 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
HDAC3O15379 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC3O15379 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.33■□□□□ 0.37
HDAC3O15379 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC3O15379 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
HDAC3O15379 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC3O15379 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HDAC3O15379 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms