Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 AC113404.2-201ENST00000507884 177 ntBASIC16.91■□□□□ 0.3
UPK1AO00322 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.91■□□□□ 0.3
UPK1AO00322 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
UPK1AO00322 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
UPK1AO00322 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
UPK1AO00322 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
UPK1AO00322 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
UPK1AO00322 KRT89P-201ENST00000620027 1478 ntBASIC16.91■□□□□ 0.3
UPK1AO00322 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
UPK1AO00322 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.9■□□□□ 0.3
UPK1AO00322 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.9■□□□□ 0.3
UPK1AO00322 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.9■□□□□ 0.3
UPK1AO00322 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.9■□□□□ 0.3
UPK1AO00322 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.9■□□□□ 0.3
UPK1AO00322 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.9■□□□□ 0.3
UPK1AO00322 DUTP2-201ENST00000519164 463 ntBASIC16.9■□□□□ 0.3
UPK1AO00322 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.9■□□□□ 0.3
UPK1AO00322 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
UPK1AO00322 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.9■□□□□ 0.3
UPK1AO00322 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.9■□□□□ 0.3
UPK1AO00322 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
UPK1AO00322 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.9■□□□□ 0.3
UPK1AO00322 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
UPK1AO00322 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.9■□□□□ 0.3
UPK1AO00322 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
UPK1AO00322 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.89■□□□□ 0.3
UPK1AO00322 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
UPK1AO00322 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
UPK1AO00322 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
UPK1AO00322 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.89■□□□□ 0.3
UPK1AO00322 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
UPK1AO00322 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
UPK1AO00322 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.89■□□□□ 0.29
UPK1AO00322 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.89■□□□□ 0.29
UPK1AO00322 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 FAM8A6P-201ENST00000407496 1135 ntBASIC16.89■□□□□ 0.29
UPK1AO00322 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.89■□□□□ 0.29
UPK1AO00322 AC063952.2-201ENST00000498792 1227 ntBASIC16.89■□□□□ 0.29
UPK1AO00322 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.89■□□□□ 0.29
UPK1AO00322 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.89■□□□□ 0.29
UPK1AO00322 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.89■□□□□ 0.29
UPK1AO00322 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.89■□□□□ 0.29
UPK1AO00322 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.89■□□□□ 0.29
UPK1AO00322 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
UPK1AO00322 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.89■□□□□ 0.29
UPK1AO00322 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
UPK1AO00322 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
UPK1AO00322 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.88■□□□□ 0.29
UPK1AO00322 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.88■□□□□ 0.29
UPK1AO00322 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.88■□□□□ 0.29
UPK1AO00322 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.88■□□□□ 0.29
UPK1AO00322 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
UPK1AO00322 HBZP1-201ENST00000354915 429 ntBASIC16.88■□□□□ 0.29
UPK1AO00322 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.88■□□□□ 0.29
UPK1AO00322 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms