Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL6A5A8TX70 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
COL6A5A8TX70 UXT-AS1-201ENST00000590504 1525 ntBASIC13.69□□□□□ -0.22
COL6A5A8TX70 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 RBPMS2P1-201ENST00000437762 623 ntBASIC13.68□□□□□ -0.22
COL6A5A8TX70 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL6A5A8TX70 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
COL6A5A8TX70 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 S100A2-206ENST00000497140 697 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 COX11-210ENST00000639671 696 ntBASIC13.67□□□□□ -0.22
COL6A5A8TX70 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 AC132938.6-201ENST00000623828 1655 ntBASIC13.67□□□□□ -0.22
COL6A5A8TX70 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 PI4KAP1-204ENST00000612579 1703 ntBASIC13.67□□□□□ -0.22
COL6A5A8TX70 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 AC069120.2-201ENST00000524091 540 ntBASIC13.67□□□□□ -0.22
COL6A5A8TX70 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 AC100757.3-201ENST00000622361 1406 ntBASIC13.67□□□□□ -0.22
COL6A5A8TX70 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL6A5A8TX70 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL6A5A8TX70 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 SPDYE14P-201ENST00000442619 822 ntBASIC13.66□□□□□ -0.22
COL6A5A8TX70 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 INE1-201ENST00000456273 945 ntBASIC13.66□□□□□ -0.22
COL6A5A8TX70 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
COL6A5A8TX70 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC13.66□□□□□ -0.22
COL6A5A8TX70 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms