Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
USH1CQ9Y6N9 AC106886.4-201ENST00000623557 2502 ntBASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 MCCD1P1-208ENST00000445732 328 ntBASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 FAM207BP-201ENST00000447172 505 ntBASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 AL353708.3-201ENST00000610272 989 ntBASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 PCDH8P1-201ENST00000428983 2773 ntBASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USH1CQ9Y6N9 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 AGGF1P2-201ENST00000426656 2106 ntBASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 AC124016.1-201ENST00000609552 612 ntBASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 AC130371.2-201ENST00000619443 611 ntBASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 AL162727.3-201ENST00000635661 2787 ntBASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 AC009102.3-201ENST00000623118 1491 ntBASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 GPAT2P1-201ENST00000444924 1672 ntBASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USH1CQ9Y6N9 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 AC026271.3-201ENST00000571884 352 ntBASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 AC110285.5-201ENST00000611501 352 ntBASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 CICP6-201ENST00000457191 2729 ntBASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USH1CQ9Y6N9 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms