Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 KRT8P47-201ENST00000604727 1398 ntBASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.1■□□□□ 0.33
PCDHGA1Q9Y5H4 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 AC093484.2-201ENST00000580996 2166 ntBASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 AC004706.3-202ENST00000621574 984 ntBASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.09■□□□□ 0.33
PCDHGA1Q9Y5H4 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PCDHGA1Q9Y5H4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 PRSS29P-201ENST00000440800 595 ntBASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.08■□□□□ 0.32
PCDHGA1Q9Y5H4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 AL645939.2-201ENST00000427340 991 ntBASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 VN2R19P-201ENST00000442399 1052 ntBASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PCDHGA1Q9Y5H4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms