Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
LIMA1Q9UHB6 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 AL391807.1-203ENST00000604392 2365 ntBASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMA1Q9UHB6 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 RASA4DP-201ENST00000460726 1199 ntBASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 RPS20-210ENST00000523936 899 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 AC009154.2-201ENST00000621177 724 ntBASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 AC084018.2-201ENST00000613093 2607 ntBASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.48■□□□□ 0.71
LIMA1Q9UHB6 AC090340.1-201ENST00000620778 4980 ntBASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 AC011676.5-201ENST00000624864 2660 ntBASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 AC005104.2-201ENST00000427818 678 ntBASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 AC004263.2-201ENST00000617183 678 ntBASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 KRT18P22-201ENST00000402024 1347 ntBASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMA1Q9UHB6 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms