Protein–RNA interactions for Protein: Q96PV0

SYNGAP1, Ras/Rap GTPase-activating protein SynGAP, humanhuman

Predictions only

Length 1,343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1Q96PV0 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 AC073592.4-201ENST00000623827 446 ntBASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SYNGAP1Q96PV0 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 KRT18P3-201ENST00000451602 1288 ntBASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 AC122714.2-201ENST00000502787 707 ntBASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 PMPCAP1-201ENST00000508114 1576 ntBASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
SYNGAP1Q96PV0 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 UNC93B6-202ENST00000528242 690 ntBASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 AP002414.3-201ENST00000589352 1468 ntBASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SYNGAP1Q96PV0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 PHGDH-209ENST00000641074 1780 ntBASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 UPF3AP3-201ENST00000420996 769 ntBASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 AL022326.1-202ENST00000641533 845 ntBASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SYNGAP1Q96PV0 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms