Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AL353801.3-201ENST00000609898 542 ntBASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.84■□□□□ 0.29
PTCHD1Q96NR3 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.29
PTCHD1Q96NR3 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.83■□□□□ 0.29
PTCHD1Q96NR3 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
PTCHD1Q96NR3 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 AC005332.8-201ENST00000622750 2735 ntBASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PTCHD1Q96NR3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 NSUN5P1-202ENST00000421140 1535 ntBASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 NSUN5P2-203ENST00000457352 1529 ntBASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 IGHV3-47-201ENST00000425060 335 ntBASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 AC099336.1-202ENST00000602961 463 ntBASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 AC012313.10-201ENST00000623509 926 ntBASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PTCHD1Q96NR3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PTCHD1Q96NR3 AP000997.3-201ENST00000623333 2250 ntBASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms