Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 AC113404.2-201ENST00000507884 177 ntBASIC13.4□□□□□ -0.26
LINC00477Q96M19 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 NT5C-210ENST00000582160 860 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 TMEM191A-211ENST00000637163 1067 ntBASIC13.4□□□□□ -0.26
LINC00477Q96M19 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
LINC00477Q96M19 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
LINC00477Q96M19 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
LINC00477Q96M19 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC13.4□□□□□ -0.27
LINC00477Q96M19 AL645608.8-201ENST00000606034 2086 ntBASIC13.4□□□□□ -0.27
LINC00477Q96M19 AL355312.1-201ENST00000407115 2176 ntBASIC13.39□□□□□ -0.27
LINC00477Q96M19 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.39□□□□□ -0.27
LINC00477Q96M19 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC13.39□□□□□ -0.27
LINC00477Q96M19 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 INGX-201ENST00000359239 846 ntBASIC13.38□□□□□ -0.27
LINC00477Q96M19 CRAT-202ENST00000393384 973 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 MIR4497-201ENST00000583208 89 ntBASIC13.38□□□□□ -0.27
LINC00477Q96M19 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
LINC00477Q96M19 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
LINC00477Q96M19 AC010947.1-201ENST00000623454 693 ntBASIC13.38□□□□□ -0.27
LINC00477Q96M19 LINC01451-201ENST00000623792 534 ntBASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms