Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 AC005332.7-201ENST00000614046 2005 ntBASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 AC004706.3-202ENST00000621574 984 ntBASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 C20orf181-201ENST00000623918 480 ntBASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SNRNP40Q96DI7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 AL020989.1-201ENST00000422979 469 ntBASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 HTR5BP-201ENST00000430851 1154 ntBASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 AC018845.2-201ENST00000568326 409 ntBASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 MIR4751-201ENST00000578027 74 ntBASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 MIR3197-201ENST00000582241 73 ntBASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 AC006504.4-201ENST00000592118 1568 ntBASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 KRT8P47-201ENST00000604727 1398 ntBASIC15.98■□□□□ 0.15
SNRNP40Q96DI7 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 ELK2BP-201ENST00000415014 1224 ntBASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 VN2R19P-201ENST00000442399 1052 ntBASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
SNRNP40Q96DI7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms