Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 DUX4L27-201ENST00000554796 1261 ntBASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 AJ011932.1-201ENST00000621707 465 ntBASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRIM43Q96BQ3 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 AC003669.1-201ENST00000334569 611 ntBASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 FAM86GP-201ENST00000448322 971 ntBASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 GGTLC5P-201ENST00000617623 998 ntBASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC19.25■□□□□ 0.67
TRIM43Q96BQ3 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 AC063926.2-201ENST00000623766 1308 ntBASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 ESPNP-201ENST00000270691 2015 ntBASIC19.24■□□□□ 0.67
TRIM43Q96BQ3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 AC068137.2-201ENST00000605408 478 ntBASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRIM43Q96BQ3 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 AC092919.2-201ENST00000623631 1645 ntBASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TRIM43Q96BQ3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms