Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS33AQ96AX1 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS33AQ96AX1 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
VPS33AQ96AX1 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.18■□□□□ 0.34
VPS33AQ96AX1 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS33AQ96AX1 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS33AQ96AX1 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 AC010240.3-201ENST00000607688 395 ntBASIC17.17■□□□□ 0.34
VPS33AQ96AX1 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.17■□□□□ 0.34
VPS33AQ96AX1 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
VPS33AQ96AX1 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 AC011676.5-201ENST00000624864 2660 ntBASIC17.16■□□□□ 0.34
VPS33AQ96AX1 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 NKILA-202ENST00000614771 2598 ntBASIC17.16■□□□□ 0.34
VPS33AQ96AX1 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 AL390955.1-201ENST00000428694 934 ntBASIC17.16■□□□□ 0.34
VPS33AQ96AX1 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 RBM17P1-201ENST00000453646 1190 ntBASIC17.16■□□□□ 0.34
VPS33AQ96AX1 BX088651.1-201ENST00000540551 451 ntBASIC17.16■□□□□ 0.34
VPS33AQ96AX1 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 Z99916.2-201ENST00000604037 246 ntBASIC17.16■□□□□ 0.34
VPS33AQ96AX1 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
VPS33AQ96AX1 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 AL138688.1-201ENST00000624851 1594 ntBASIC17.15■□□□□ 0.34
VPS33AQ96AX1 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 UNC93B2-201ENST00000285383 730 ntBASIC17.15■□□□□ 0.34
VPS33AQ96AX1 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.15■□□□□ 0.34
VPS33AQ96AX1 AC007663.1-201ENST00000438948 1240 ntBASIC17.15■□□□□ 0.34
VPS33AQ96AX1 CCR12P-201ENST00000446203 998 ntBASIC17.15■□□□□ 0.34
VPS33AQ96AX1 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms