Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
RTF1Q92541 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC23.23■■□□□ 1.31
RTF1Q92541 ADM-208ENST00000534464 1640 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 RNA5SP419-201ENST00000515908 135 ntBASIC23.23■■□□□ 1.31
RTF1Q92541 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 SART3-203ENST00000546611 1184 ntBASIC23.23■■□□□ 1.31
RTF1Q92541 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC23.23■■□□□ 1.31
RTF1Q92541 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
RTF1Q92541 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC23.23■■□□□ 1.31
RTF1Q92541 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC23.23■■□□□ 1.31
RTF1Q92541 AP000997.3-201ENST00000623333 2250 ntBASIC23.22■■□□□ 1.31
RTF1Q92541 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
RTF1Q92541 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC23.22■■□□□ 1.31
RTF1Q92541 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 AC103564.2-201ENST00000432853 1299 ntBASIC23.22■■□□□ 1.31
RTF1Q92541 AC018712.1-201ENST00000455767 687 ntBASIC23.22■■□□□ 1.31
RTF1Q92541 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.22■■□□□ 1.31
RTF1Q92541 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
RTF1Q92541 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.22■■□□□ 1.31
RTF1Q92541 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.22■■□□□ 1.31
RTF1Q92541 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC23.22■■□□□ 1.31
RTF1Q92541 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC23.22■■□□□ 1.31
RTF1Q92541 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC23.22■■□□□ 1.31
RTF1Q92541 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
RTF1Q92541 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
RTF1Q92541 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
RTF1Q92541 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC23.21■■□□□ 1.31
RTF1Q92541 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.21■■□□□ 1.31
RTF1Q92541 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC23.21■■□□□ 1.31
RTF1Q92541 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
RTF1Q92541 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC23.21■■□□□ 1.31
RTF1Q92541 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC23.21■■□□□ 1.31
RTF1Q92541 AL139288.1-201ENST00000623748 933 ntBASIC23.21■■□□□ 1.31
RTF1Q92541 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC23.21■■□□□ 1.31
RTF1Q92541 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.21■■□□□ 1.31
RTF1Q92541 STK4-201ENST00000372801 2038 ntTSL 2 BASIC23.21■■□□□ 1.31
RTF1Q92541 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
RTF1Q92541 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
RTF1Q92541 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
RTF1Q92541 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RTF1Q92541 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC23.2■■□□□ 1.3
RTF1Q92541 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC23.2■■□□□ 1.3
RTF1Q92541 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC23.2■■□□□ 1.3
RTF1Q92541 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC23.2■■□□□ 1.3
RTF1Q92541 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
RTF1Q92541 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC23.2■■□□□ 1.3
RTF1Q92541 AC093909.1-201ENST00000504731 1122 ntBASIC23.2■■□□□ 1.3
RTF1Q92541 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC23.2■■□□□ 1.3
RTF1Q92541 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC23.2■■□□□ 1.3
RTF1Q92541 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
RTF1Q92541 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
RTF1Q92541 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC23.2■■□□□ 1.3
RTF1Q92541 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
RTF1Q92541 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC23.19■■□□□ 1.3
RTF1Q92541 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC23.19■■□□□ 1.3
RTF1Q92541 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
RTF1Q92541 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms