Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
CLRN3Q8NCR9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 MIR638-201ENST00000385237 100 ntBASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 AL031432.3-201ENST00000607698 485 ntBASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 KRT18P55-202ENST00000578578 1546 ntBASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CLRN3Q8NCR9 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 TSPY26P-201ENST00000476365 1326 ntBASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 TFP1-202ENST00000475455 1573 ntBASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 AL365203.3-201ENST00000609742 2057 ntBASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 MAG-206ENST00000597035 542 ntTSL 4 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 KRT8P45-201ENST00000414328 1447 ntBASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
CLRN3Q8NCR9 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CLRN3Q8NCR9 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms