Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USP38Q8NB14 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.92■□□□□ 0.78
USP38Q8NB14 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.92■□□□□ 0.78
USP38Q8NB14 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.92■□□□□ 0.78
USP38Q8NB14 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.92■□□□□ 0.78
USP38Q8NB14 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
USP38Q8NB14 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
USP38Q8NB14 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP38Q8NB14 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.91■□□□□ 0.78
USP38Q8NB14 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP38Q8NB14 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
USP38Q8NB14 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP38Q8NB14 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP38Q8NB14 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP38Q8NB14 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC19.91■□□□□ 0.78
USP38Q8NB14 AC018712.1-201ENST00000455767 687 ntBASIC19.91■□□□□ 0.78
USP38Q8NB14 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.91■□□□□ 0.78
USP38Q8NB14 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.91■□□□□ 0.78
USP38Q8NB14 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC19.91■□□□□ 0.78
USP38Q8NB14 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.91■□□□□ 0.78
USP38Q8NB14 AC009154.2-201ENST00000621177 724 ntBASIC19.91■□□□□ 0.78
USP38Q8NB14 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP38Q8NB14 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.91■□□□□ 0.78
USP38Q8NB14 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP38Q8NB14 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.91■□□□□ 0.78
USP38Q8NB14 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USP38Q8NB14 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 AC073592.3-201ENST00000625118 1834 ntBASIC19.9■□□□□ 0.78
USP38Q8NB14 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
USP38Q8NB14 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.9■□□□□ 0.78
USP38Q8NB14 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
USP38Q8NB14 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
USP38Q8NB14 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.9■□□□□ 0.78
USP38Q8NB14 DANCR-204ENST00000444958 709 ntTSL 3 BASIC19.9■□□□□ 0.78
USP38Q8NB14 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.9■□□□□ 0.78
USP38Q8NB14 AC068472.1-201ENST00000474589 881 ntBASIC19.9■□□□□ 0.78
USP38Q8NB14 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.9■□□□□ 0.78
USP38Q8NB14 SART3-203ENST00000546611 1184 ntBASIC19.9■□□□□ 0.78
USP38Q8NB14 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.9■□□□□ 0.78
USP38Q8NB14 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.9■□□□□ 0.78
USP38Q8NB14 AL024508.2-201ENST00000607749 1894 ntBASIC19.9■□□□□ 0.78
USP38Q8NB14 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.9■□□□□ 0.78
USP38Q8NB14 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC19.9■□□□□ 0.78
USP38Q8NB14 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
USP38Q8NB14 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.9■□□□□ 0.78
USP38Q8NB14 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.89■□□□□ 0.77
USP38Q8NB14 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.89■□□□□ 0.77
USP38Q8NB14 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.89■□□□□ 0.77
USP38Q8NB14 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP38Q8NB14 AC004967.1-201ENST00000453589 447 ntBASIC19.89■□□□□ 0.77
USP38Q8NB14 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
USP38Q8NB14 AC096582.2-201ENST00000510860 516 ntBASIC19.89■□□□□ 0.77
USP38Q8NB14 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.89■□□□□ 0.77
USP38Q8NB14 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.89■□□□□ 0.77
USP38Q8NB14 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.89■□□□□ 0.77
USP38Q8NB14 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.89■□□□□ 0.77
USP38Q8NB14 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
USP38Q8NB14 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.89■□□□□ 0.77
USP38Q8NB14 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP38Q8NB14 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms