Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 PMS2P2-201ENST00000425039 1128 ntBASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 AC103564.2-201ENST00000432853 1299 ntBASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 AC079781.4-201ENST00000641908 219 ntBASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
NPAS3Q8IXF0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 COX5BP2-201ENST00000392354 334 ntBASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
NPAS3Q8IXF0 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
NPAS3Q8IXF0 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NPAS3Q8IXF0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
NPAS3Q8IXF0 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
NPAS3Q8IXF0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
NPAS3Q8IXF0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 AL589182.2-201ENST00000619332 1049 ntBASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
NPAS3Q8IXF0 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 ELK2BP-201ENST00000415014 1224 ntBASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 KRT18P2-201ENST00000447938 1258 ntBASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 DUTP2-201ENST00000519164 463 ntBASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
NPAS3Q8IXF0 MTDHP5-201ENST00000598980 586 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms