Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 AC073508.3-201ENST00000619697 1419 ntBASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 KRT89P-201ENST00000620027 1478 ntBASIC19.67■□□□□ 0.74
CCDC40Q4G0X9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 FAM8A6P-201ENST00000407496 1135 ntBASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AC211429.1-201ENST00000415277 523 ntBASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 KRT18P48-201ENST00000434763 852 ntBASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AC106820.2-201ENST00000563775 3264 ntBASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC40Q4G0X9 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC40Q4G0X9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC40Q4G0X9 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
CCDC40Q4G0X9 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC40Q4G0X9 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC40Q4G0X9 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.74
CCDC40Q4G0X9 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 AC012313.1-201ENST00000593393 3059 ntBASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 HLA-F-220ENST00000434407 884 ntBASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 AC092597.1-201ENST00000487352 616 ntBASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC19.64■□□□□ 0.73
CCDC40Q4G0X9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms