Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.52■□□□□ 0.24
RNF4P78317 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.52■□□□□ 0.24
RNF4P78317 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 KRT16P4-201ENST00000453883 522 ntBASIC16.52■□□□□ 0.24
RNF4P78317 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
RNF4P78317 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.52■□□□□ 0.24
RNF4P78317 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.52■□□□□ 0.24
RNF4P78317 AL732292.2-201ENST00000609649 430 ntBASIC16.52■□□□□ 0.24
RNF4P78317 AC116407.2-201ENST00000613639 860 ntBASIC16.52■□□□□ 0.24
RNF4P78317 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
RNF4P78317 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.52■□□□□ 0.23
RNF4P78317 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.52■□□□□ 0.23
RNF4P78317 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
RNF4P78317 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
RNF4P78317 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF4P78317 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 KRT18P55-202ENST00000578578 1546 ntBASIC16.51■□□□□ 0.23
RNF4P78317 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.51■□□□□ 0.23
RNF4P78317 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.51■□□□□ 0.23
RNF4P78317 AC096633.1-201ENST00000422446 749 ntBASIC16.51■□□□□ 0.23
RNF4P78317 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.51■□□□□ 0.23
RNF4P78317 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF4P78317 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.51■□□□□ 0.23
RNF4P78317 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 AC114341.1-201ENST00000618070 349 ntBASIC16.51■□□□□ 0.23
RNF4P78317 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC16.51■□□□□ 0.23
RNF4P78317 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.51■□□□□ 0.23
RNF4P78317 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
RNF4P78317 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.5■□□□□ 0.23
RNF4P78317 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.5■□□□□ 0.23
RNF4P78317 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 RCN1P2-201ENST00000398357 915 ntBASIC16.5■□□□□ 0.23
RNF4P78317 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
RNF4P78317 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 AC011467.2-201ENST00000598425 242 ntBASIC16.5■□□□□ 0.23
RNF4P78317 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.5■□□□□ 0.23
RNF4P78317 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
RNF4P78317 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
RNF4P78317 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms