Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.61■□□□□ 0.41
LIMK1P53667 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.61■□□□□ 0.41
LIMK1P53667 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.61■□□□□ 0.41
LIMK1P53667 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMK1P53667 ALG1L5P-201ENST00000482043 771 ntBASIC17.61■□□□□ 0.41
LIMK1P53667 KRT18P41-201ENST00000518924 1277 ntBASIC17.61■□□□□ 0.41
LIMK1P53667 AC068587.9-201ENST00000641814 219 ntBASIC17.61■□□□□ 0.41
LIMK1P53667 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.61■□□□□ 0.41
LIMK1P53667 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
LIMK1P53667 FEM1AP3-201ENST00000403722 1741 ntBASIC17.61■□□□□ 0.41
LIMK1P53667 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 Z98044.1-201ENST00000632503 1764 ntBASIC17.61■□□□□ 0.41
LIMK1P53667 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIMK1P53667 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 AL133373.2-201ENST00000623187 2828 ntBASIC17.6■□□□□ 0.41
LIMK1P53667 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 KRT18P27-201ENST00000427733 1299 ntBASIC17.6■□□□□ 0.41
LIMK1P53667 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.6■□□□□ 0.41
LIMK1P53667 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 AC006557.2-201ENST00000592985 1240 ntBASIC17.6■□□□□ 0.41
LIMK1P53667 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.6■□□□□ 0.41
LIMK1P53667 AL096865.1-201ENST00000606796 927 ntBASIC17.6■□□□□ 0.41
LIMK1P53667 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
LIMK1P53667 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.6■□□□□ 0.41
LIMK1P53667 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LIMK1P53667 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
LIMK1P53667 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.59■□□□□ 0.41
LIMK1P53667 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMK1P53667 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
LIMK1P53667 NOC2LP2-201ENST00000407594 1944 ntBASIC17.59■□□□□ 0.41
LIMK1P53667 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIMK1P53667 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LIMK1P53667 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LIMK1P53667 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMK1P53667 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.59■□□□□ 0.41
LIMK1P53667 AC108751.1-201ENST00000490852 363 ntBASIC17.59■□□□□ 0.41
LIMK1P53667 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 AC106028.4-201ENST00000614509 607 ntBASIC17.59■□□□□ 0.41
LIMK1P53667 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
LIMK1P53667 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.59■□□□□ 0.41
LIMK1P53667 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LIMK1P53667 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.58■□□□□ 0.41
LIMK1P53667 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMK1P53667 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMK1P53667 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.58■□□□□ 0.41
LIMK1P53667 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMK1P53667 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMK1P53667 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.58■□□□□ 0.41
LIMK1P53667 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.58■□□□□ 0.41
LIMK1P53667 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.58■□□□□ 0.41
LIMK1P53667 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMK1P53667 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.58■□□□□ 0.41
LIMK1P53667 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LIMK1P53667 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
LIMK1P53667 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LIMK1P53667 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms