Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL18A1P39060 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL18A1P39060 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC23.36■■□□□ 1.33
COL18A1P39060 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
COL18A1P39060 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL18A1P39060 ACTG1P14-201ENST00000446382 1122 ntBASIC23.36■■□□□ 1.33
COL18A1P39060 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC23.36■■□□□ 1.33
COL18A1P39060 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
COL18A1P39060 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
COL18A1P39060 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
COL18A1P39060 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC23.36■■□□□ 1.33
COL18A1P39060 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC23.36■■□□□ 1.33
COL18A1P39060 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL18A1P39060 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL18A1P39060 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
COL18A1P39060 AC025580.3-201ENST00000617932 1424 ntBASIC23.36■■□□□ 1.33
COL18A1P39060 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC23.36■■□□□ 1.33
COL18A1P39060 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
COL18A1P39060 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
COL18A1P39060 WDR53-203ENST00000429115 683 ntTSL 2 BASIC23.35■■□□□ 1.33
COL18A1P39060 AC023141.5-201ENST00000458585 616 ntBASIC23.35■■□□□ 1.33
COL18A1P39060 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 MED16-214ENST00000617672 554 ntTSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL18A1P39060 AC092919.2-201ENST00000623631 1645 ntBASIC23.35■■□□□ 1.33
COL18A1P39060 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL18A1P39060 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC23.35■■□□□ 1.33
COL18A1P39060 AC097637.2-201ENST00000624096 1997 ntBASIC23.35■■□□□ 1.33
COL18A1P39060 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL18A1P39060 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
COL18A1P39060 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 LHX6-205ENST00000464484 666 ntTSL 2 BASIC23.35■■□□□ 1.33
COL18A1P39060 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC23.35■■□□□ 1.33
COL18A1P39060 IGHV3OR16-6-201ENST00000568775 360 ntBASIC23.35■■□□□ 1.33
COL18A1P39060 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC23.35■■□□□ 1.33
COL18A1P39060 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC23.34■■□□□ 1.33
COL18A1P39060 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 DDT-204ENST00000404092 805 ntTSL 3 BASIC23.34■■□□□ 1.33
COL18A1P39060 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
COL18A1P39060 LINC00982-205ENST00000420957 435 ntBASIC23.34■■□□□ 1.33
COL18A1P39060 HLA-J-203ENST00000494367 1087 ntBASIC23.34■■□□□ 1.33
COL18A1P39060 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC23.34■■□□□ 1.33
COL18A1P39060 CCND1-203ENST00000536559 553 ntTSL 3 BASIC23.34■■□□□ 1.33
COL18A1P39060 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC23.34■■□□□ 1.33
COL18A1P39060 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC23.34■■□□□ 1.33
COL18A1P39060 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC23.34■■□□□ 1.33
COL18A1P39060 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
COL18A1P39060 AC006116.8-202ENST00000587620 1550 ntBASIC23.34■■□□□ 1.33
COL18A1P39060 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.33
COL18A1P39060 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC23.33■■□□□ 1.33
COL18A1P39060 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC23.33■■□□□ 1.33
COL18A1P39060 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC23.33■■□□□ 1.33
COL18A1P39060 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC23.33■■□□□ 1.33
COL18A1P39060 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.33
COL18A1P39060 AC099522.2-201ENST00000607001 744 ntBASIC23.33■■□□□ 1.33
COL18A1P39060 AC009093.7-201ENST00000623853 1223 ntBASIC23.33■■□□□ 1.33
COL18A1P39060 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
COL18A1P39060 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC23.33■■□□□ 1.33
COL18A1P39060 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
COL18A1P39060 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL18A1P39060 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL18A1P39060 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
COL18A1P39060 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
COL18A1P39060 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL18A1P39060 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC23.32■■□□□ 1.32
COL18A1P39060 POR-209ENST00000439269 1858 ntTSL 2 BASIC23.32■■□□□ 1.32
COL18A1P39060 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC23.32■■□□□ 1.32
COL18A1P39060 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL18A1P39060 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC23.32■■□□□ 1.32
COL18A1P39060 AC023141.13-201ENST00000604991 943 ntBASIC23.32■■□□□ 1.32
COL18A1P39060 AC105339.1-204ENST00000636249 355 ntBASIC23.32■■□□□ 1.32
COL18A1P39060 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
COL18A1P39060 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.32■■□□□ 1.32
COL18A1P39060 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms