Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
HLA-DMBP28068 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
HLA-DMBP28068 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 HMGA1P5-201ENST00000412453 271 ntBASIC13.62□□□□□ -0.23
HLA-DMBP28068 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 AC010203.1-204ENST00000548782 407 ntBASIC13.62□□□□□ -0.23
HLA-DMBP28068 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 FAM87A-204ENST00000613235 858 ntBASIC13.62□□□□□ -0.23
HLA-DMBP28068 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HLA-DMBP28068 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC13.62□□□□□ -0.23
HLA-DMBP28068 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 HARS-201ENST00000307633 1780 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 NARF-204ENST00000390006 1766 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 GAD2-202ENST00000376248 680 ntTSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 GPX4-207ENST00000589115 812 ntTSL 2 BASIC13.61□□□□□ -0.23
HLA-DMBP28068 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HLA-DMBP28068 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms