Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 FAM220CP-201ENST00000395253 831 ntBASIC18.8■□□□□ 0.6
BDNFP23560 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.8■□□□□ 0.6
BDNFP23560 AC009078.2-202ENST00000463353 338 ntBASIC18.8■□□□□ 0.6
BDNFP23560 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.8■□□□□ 0.6
BDNFP23560 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 AL160237.2-201ENST00000556165 472 ntBASIC18.8■□□□□ 0.6
BDNFP23560 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 AP001269.4-201ENST00000609611 512 ntBASIC18.8■□□□□ 0.6
BDNFP23560 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
BDNFP23560 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 KRT8P10-201ENST00000450021 1447 ntBASIC18.8■□□□□ 0.6
BDNFP23560 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
BDNFP23560 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.8■□□□□ 0.6
BDNFP23560 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
BDNFP23560 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
BDNFP23560 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC18.79■□□□□ 0.6
BDNFP23560 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
BDNFP23560 AC008608.2-201ENST00000606089 416 ntBASIC18.79■□□□□ 0.6
BDNFP23560 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.79■□□□□ 0.6
BDNFP23560 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.79■□□□□ 0.6
BDNFP23560 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
BDNFP23560 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.79■□□□□ 0.6
BDNFP23560 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
BDNFP23560 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
BDNFP23560 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
BDNFP23560 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
BDNFP23560 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.78■□□□□ 0.6
BDNFP23560 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 FDX1P1-201ENST00000449115 551 ntBASIC18.78■□□□□ 0.6
BDNFP23560 AP002469.2-201ENST00000531724 424 ntBASIC18.78■□□□□ 0.6
BDNFP23560 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.78■□□□□ 0.6
BDNFP23560 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.78■□□□□ 0.6
BDNFP23560 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.78■□□□□ 0.6
BDNFP23560 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
BDNFP23560 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.78■□□□□ 0.6
BDNFP23560 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC18.78■□□□□ 0.6
BDNFP23560 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.78■□□□□ 0.6
BDNFP23560 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 FLJ13224-201ENST00000313737 1514 ntBASIC18.78■□□□□ 0.6
BDNFP23560 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
BDNFP23560 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
BDNFP23560 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.78■□□□□ 0.6
BDNFP23560 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.77■□□□□ 0.6
BDNFP23560 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.77■□□□□ 0.6
BDNFP23560 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
BDNFP23560 AC138028.4-201ENST00000564984 1845 ntBASIC18.77■□□□□ 0.6
BDNFP23560 AC009949.1-201ENST00000623048 1830 ntBASIC18.77■□□□□ 0.6
BDNFP23560 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms