Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RFX1P22670 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RFX1P22670 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
RFX1P22670 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
RFX1P22670 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX1P22670 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
RFX1P22670 AC005332.8-201ENST00000622750 2735 ntBASIC19.45■□□□□ 0.7
RFX1P22670 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
RFX1P22670 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX1P22670 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RFX1P22670 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
RFX1P22670 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX1P22670 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.44■□□□□ 0.7
RFX1P22670 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC19.44■□□□□ 0.7
RFX1P22670 NUS1P1-201ENST00000446295 882 ntBASIC19.44■□□□□ 0.7
RFX1P22670 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.44■□□□□ 0.7
RFX1P22670 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
RFX1P22670 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
RFX1P22670 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC19.44■□□□□ 0.7
RFX1P22670 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 LINC00896-202ENST00000609602 2128 ntBASIC19.43■□□□□ 0.7
RFX1P22670 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
RFX1P22670 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
RFX1P22670 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX1P22670 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.43■□□□□ 0.7
RFX1P22670 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
RFX1P22670 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX1P22670 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.43■□□□□ 0.7
RFX1P22670 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 EMBP1-201ENST00000458200 901 ntBASIC19.43■□□□□ 0.7
RFX1P22670 AC009078.2-202ENST00000463353 338 ntBASIC19.43■□□□□ 0.7
RFX1P22670 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 AP000867.3-201ENST00000524675 377 ntBASIC19.43■□□□□ 0.7
RFX1P22670 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.43■□□□□ 0.7
RFX1P22670 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.43■□□□□ 0.7
RFX1P22670 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.43■□□□□ 0.7
RFX1P22670 AC024563.2-201ENST00000603282 481 ntBASIC19.43■□□□□ 0.7
RFX1P22670 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
RFX1P22670 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
RFX1P22670 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
RFX1P22670 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
RFX1P22670 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.43■□□□□ 0.7
RFX1P22670 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC19.43■□□□□ 0.7
RFX1P22670 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
RFX1P22670 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
RFX1P22670 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.42■□□□□ 0.7
RFX1P22670 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
RFX1P22670 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.42■□□□□ 0.7
RFX1P22670 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.42■□□□□ 0.7
RFX1P22670 KRT8P26-201ENST00000534154 1276 ntBASIC19.42■□□□□ 0.7
RFX1P22670 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.42■□□□□ 0.7
RFX1P22670 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.42■□□□□ 0.7
RFX1P22670 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms