Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC003669.1-201ENST00000334569 611 ntBASIC18.27■□□□□ 0.52
COL9A1P20849 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.27■□□□□ 0.52
COL9A1P20849 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.27■□□□□ 0.52
COL9A1P20849 MTCL1P1-201ENST00000446207 792 ntBASIC18.27■□□□□ 0.52
COL9A1P20849 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.27■□□□□ 0.52
COL9A1P20849 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.27■□□□□ 0.52
COL9A1P20849 AC008686.1-203ENST00000591826 463 ntTSL 2 BASIC18.27■□□□□ 0.52
COL9A1P20849 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC18.27■□□□□ 0.52
COL9A1P20849 AC105339.1-204ENST00000636249 355 ntBASIC18.27■□□□□ 0.52
COL9A1P20849 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
COL9A1P20849 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.27■□□□□ 0.51
COL9A1P20849 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL9A1P20849 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.27■□□□□ 0.51
COL9A1P20849 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL9A1P20849 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
COL9A1P20849 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
COL9A1P20849 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL9A1P20849 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL9A1P20849 AC125634.1-201ENST00000438758 1403 ntBASIC18.26■□□□□ 0.51
COL9A1P20849 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
COL9A1P20849 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.26■□□□□ 0.51
COL9A1P20849 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 KRT18P27-201ENST00000427733 1299 ntBASIC18.26■□□□□ 0.51
COL9A1P20849 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL9A1P20849 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.26■□□□□ 0.51
COL9A1P20849 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC18.26■□□□□ 0.51
COL9A1P20849 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.26■□□□□ 0.51
COL9A1P20849 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 AL662799.1-202ENST00000614205 422 ntBASIC18.26■□□□□ 0.51
COL9A1P20849 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL9A1P20849 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL9A1P20849 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.26■□□□□ 0.51
COL9A1P20849 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.26■□□□□ 0.51
COL9A1P20849 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.26■□□□□ 0.51
COL9A1P20849 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.26■□□□□ 0.51
COL9A1P20849 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.26■□□□□ 0.51
COL9A1P20849 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
COL9A1P20849 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.26■□□□□ 0.51
COL9A1P20849 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.26■□□□□ 0.51
COL9A1P20849 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.25■□□□□ 0.51
COL9A1P20849 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.25■□□□□ 0.51
COL9A1P20849 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.25■□□□□ 0.51
COL9A1P20849 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.25■□□□□ 0.51
COL9A1P20849 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.25■□□□□ 0.51
COL9A1P20849 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.25■□□□□ 0.51
COL9A1P20849 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
COL9A1P20849 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC18.25■□□□□ 0.51
COL9A1P20849 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.25■□□□□ 0.51
COL9A1P20849 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.25■□□□□ 0.51
COL9A1P20849 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
COL9A1P20849 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC18.25■□□□□ 0.51
COL9A1P20849 AL138831.2-201ENST00000606564 490 ntBASIC18.25■□□□□ 0.51
COL9A1P20849 AC017083.2-201ENST00000608069 979 ntBASIC18.25■□□□□ 0.51
COL9A1P20849 AC009154.2-201ENST00000621177 724 ntBASIC18.25■□□□□ 0.51
COL9A1P20849 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.25■□□□□ 0.51
COL9A1P20849 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
COL9A1P20849 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.24■□□□□ 0.51
COL9A1P20849 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.24■□□□□ 0.51
COL9A1P20849 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
COL9A1P20849 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.24■□□□□ 0.51
COL9A1P20849 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.24■□□□□ 0.51
COL9A1P20849 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
COL9A1P20849 AC092506.1-202ENST00000401022 528 ntBASIC18.24■□□□□ 0.51
COL9A1P20849 MIR943-201ENST00000401286 94 ntBASIC18.24■□□□□ 0.51
COL9A1P20849 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.24■□□□□ 0.51
COL9A1P20849 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms