Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGA1P17096 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 FUT8-AS1-201ENST00000621019 1521 ntBASIC18.44■□□□□ 0.54
HMGA1P17096 BX276092.7-203ENST00000637198 1536 ntBASIC18.44■□□□□ 0.54
HMGA1P17096 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
HMGA1P17096 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 AL020989.1-201ENST00000422979 469 ntBASIC18.44■□□□□ 0.54
HMGA1P17096 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
HMGA1P17096 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.44■□□□□ 0.54
HMGA1P17096 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGA1P17096 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGA1P17096 SDCCAG3P1-201ENST00000589292 1150 ntBASIC18.44■□□□□ 0.54
HMGA1P17096 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.44■□□□□ 0.54
HMGA1P17096 AC117500.6-201ENST00000624871 588 ntBASIC18.44■□□□□ 0.54
HMGA1P17096 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.44■□□□□ 0.54
HMGA1P17096 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HMGA1P17096 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
HMGA1P17096 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGA1P17096 FLJ13224-201ENST00000313737 1514 ntBASIC18.44■□□□□ 0.54
HMGA1P17096 KRT18P55-202ENST00000578578 1546 ntBASIC18.44■□□□□ 0.54
HMGA1P17096 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HMGA1P17096 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.43■□□□□ 0.54
HMGA1P17096 AC073621.1-201ENST00000392730 636 ntBASIC18.43■□□□□ 0.54
HMGA1P17096 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
HMGA1P17096 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
HMGA1P17096 AC109462.3-201ENST00000573934 613 ntBASIC18.43■□□□□ 0.54
HMGA1P17096 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGA1P17096 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.43■□□□□ 0.54
HMGA1P17096 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGA1P17096 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.43■□□□□ 0.54
HMGA1P17096 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
HMGA1P17096 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
HMGA1P17096 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGA1P17096 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
HMGA1P17096 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGA1P17096 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGA1P17096 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGA1P17096 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
HMGA1P17096 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
HMGA1P17096 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.42■□□□□ 0.54
HMGA1P17096 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.42■□□□□ 0.54
HMGA1P17096 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.42■□□□□ 0.54
HMGA1P17096 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.42■□□□□ 0.54
HMGA1P17096 UNC93B6-202ENST00000528242 690 ntBASIC18.42■□□□□ 0.54
HMGA1P17096 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 Z83851.2-201ENST00000609564 659 ntBASIC18.42■□□□□ 0.54
HMGA1P17096 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
HMGA1P17096 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGA1P17096 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
HMGA1P17096 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
HMGA1P17096 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGA1P17096 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
HMGA1P17096 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGA1P17096 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGA1P17096 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms