Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP1O94782 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP1O94782 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP1O94782 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
USP1O94782 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
USP1O94782 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP1O94782 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
USP1O94782 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.09■□□□□ 0.49
USP1O94782 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.09■□□□□ 0.49
USP1O94782 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.09■□□□□ 0.49
USP1O94782 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.09■□□□□ 0.49
USP1O94782 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
USP1O94782 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
USP1O94782 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP1O94782 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
USP1O94782 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
USP1O94782 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.08■□□□□ 0.49
USP1O94782 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.08■□□□□ 0.49
USP1O94782 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP1O94782 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
USP1O94782 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
USP1O94782 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.08■□□□□ 0.48
USP1O94782 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC18.08■□□□□ 0.48
USP1O94782 LIN28AP1-201ENST00000429574 405 ntBASIC18.08■□□□□ 0.48
USP1O94782 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
USP1O94782 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.08■□□□□ 0.48
USP1O94782 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
USP1O94782 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.08■□□□□ 0.48
USP1O94782 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.08■□□□□ 0.48
USP1O94782 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.08■□□□□ 0.48
USP1O94782 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.48
USP1O94782 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.08■□□□□ 0.48
USP1O94782 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
USP1O94782 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
USP1O94782 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.07■□□□□ 0.48
USP1O94782 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.07■□□□□ 0.48
USP1O94782 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.07■□□□□ 0.48
USP1O94782 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
USP1O94782 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC18.07■□□□□ 0.48
USP1O94782 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.07■□□□□ 0.48
USP1O94782 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
USP1O94782 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.07■□□□□ 0.48
USP1O94782 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 RCN1P1-201ENST00000400413 996 ntBASIC18.07■□□□□ 0.48
USP1O94782 ATP5G1P1-201ENST00000448724 379 ntBASIC18.07■□□□□ 0.48
USP1O94782 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.07■□□□□ 0.48
USP1O94782 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.07■□□□□ 0.48
USP1O94782 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.07■□□□□ 0.48
USP1O94782 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.07■□□□□ 0.48
USP1O94782 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.07■□□□□ 0.48
USP1O94782 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
USP1O94782 AC024563.2-201ENST00000603282 481 ntBASIC18.07■□□□□ 0.48
USP1O94782 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.07■□□□□ 0.48
USP1O94782 AC005363.2-201ENST00000618631 242 ntBASIC18.07■□□□□ 0.48
USP1O94782 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
USP1O94782 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
USP1O94782 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.07■□□□□ 0.48
USP1O94782 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
USP1O94782 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms