Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.81■□□□□ 0.28
LDB3O75112 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.81■□□□□ 0.28
LDB3O75112 ATP5G2P1-201ENST00000433580 426 ntBASIC16.81■□□□□ 0.28
LDB3O75112 DRAXINP1-201ENST00000437611 948 ntBASIC16.81■□□□□ 0.28
LDB3O75112 LINC00265-3P-201ENST00000447588 903 ntBASIC16.81■□□□□ 0.28
LDB3O75112 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.81■□□□□ 0.28
LDB3O75112 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
LDB3O75112 TOB2P1-201ENST00000469761 992 ntBASIC16.81■□□□□ 0.28
LDB3O75112 AC091607.1-201ENST00000490318 1060 ntBASIC16.81■□□□□ 0.28
LDB3O75112 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.81■□□□□ 0.28
LDB3O75112 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.81■□□□□ 0.28
LDB3O75112 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB3O75112 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LDB3O75112 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.81■□□□□ 0.28
LDB3O75112 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LDB3O75112 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LDB3O75112 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
LDB3O75112 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LDB3O75112 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB3O75112 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.8■□□□□ 0.28
LDB3O75112 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB3O75112 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.8■□□□□ 0.28
LDB3O75112 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB3O75112 AC092329.2-201ENST00000598402 547 ntBASIC16.8■□□□□ 0.28
LDB3O75112 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
LDB3O75112 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB3O75112 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LDB3O75112 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB3O75112 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
LDB3O75112 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
LDB3O75112 AC067852.2-201ENST00000590513 2313 ntBASIC16.8■□□□□ 0.28
LDB3O75112 NOC2LP2-201ENST00000407594 1944 ntBASIC16.8■□□□□ 0.28
LDB3O75112 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB3O75112 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LDB3O75112 AC009949.1-201ENST00000623048 1830 ntBASIC16.8■□□□□ 0.28
LDB3O75112 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LDB3O75112 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 AC233702.3-201ENST00000578656 1387 ntBASIC16.79■□□□□ 0.28
LDB3O75112 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB3O75112 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 AP005901.3-202ENST00000581653 237 ntBASIC16.79■□□□□ 0.28
LDB3O75112 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB3O75112 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.79■□□□□ 0.28
LDB3O75112 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB3O75112 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB3O75112 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB3O75112 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB3O75112 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB3O75112 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.78■□□□□ 0.28
LDB3O75112 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB3O75112 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms